------- SECIS element -- id:1 -- grade:B ----
 Chromosome = your_sequence Strand = - Positions = 3009 - 2931
 Found by:  Covels (score=7.42)
 Stem2 length = 8   Apical loop length = 19   Insertion in stem2 = 0, 0
 Free Energy = -7.5   Free energy of apical portion = -0.8
 Type = 2

         ..(((((((........(((((((((((((((...............))))))))))))))).........)))))))...
 model   uucggucaugcg-UuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuu-uuucaugaccg-gc
         ...(((((.........([[{{((((((((...........((....))))))))))}}]]).....-.-..)))))....
 target  GGAGCUGGGGACuCCCAUGAAGAUGGGAUGUAAAAAUAGGUGCCCAGGCCAUCUUGUGAGAGAAUUc-A-GGUCAGCAaGA
                          ****          ^^^                        ****                   

------- SECIS element -- id:2 -- grade:B ----
 Chromosome = your_sequence Strand = - Positions = 11209 - 11128
 Found by:  Covels (score=10.19)
 Stem2 length = 10   Apical loop length = 18   Insertion in stem2 = 0, 0
 Free Energy = -5.1   Free energy of apical portion = -2.2
 Type = 2

         ..(((((((........(((((((((((((((..................))))))))))))))).........)))))))..
 model   uucggucaugcg-UuaAUGAcGgccuggcccuAAAcC---cuuuuuggggcgggccaggcCuGAUGuu-uuuucaugaccggc
         ((({[{[[(........([[((([({((((((...((((......)))).))))))})])))]]).....-...)]]}]})))
 target  UGCCAUGGUCAAaAAUAUGAAAAAUCAUAACAACACAcuuUUUUCAGUGCUGUUGUAAGUUUGAACAGuC-ACUAAACGUGUG
                          ****                                        ****                  

------- SECIS element -- id:3 -- grade:B ----
 Chromosome = your_sequence Strand = + Positions = 31648 - 31728
 Found by:  Covels (score=6.88)
 Stem2 length = 7   Apical loop length = 20   Insertion in stem2 = 0, 0
 Free Energy = -6.7   Free energy of apical portion = -0.3
 Type = 2

         ..(((((((........(((((((((((((((................))))))))))).)))).........)))))))..
 model   uucggucaugcg-UuaAUGAcGgccuggcccuAAAcC-cuuuuuggggcgggccaggcC-uGAUGuuu-uuucaugaccggc
         ..([(({((........{[[[({(({((((....((((((...)))).))))))}))}).]]]}.....-...))}))])..
 target  CAUAAAAGGGCCaAGUUUGAAGACCCCUGAUUUAAGCuUUUAAGAAGACUUCAGCGGACaGGAUAAGAg-UAGUCCUUGGCU
                          ****            ^^                         ****