------- SECIS element -- id:1 -- grade:B ---- Chromosome = your_sequence Strand = - Positions = 71697 - 71611 Found by: Infernal (score=15.19) Covels (score=2.45) Stem2 length = 8 Apical loop length = 16 Insertion in stem2 = 1, 0 Free Energy = -9.5 Type = 1 ..(((((((....................((((((((((.(((((...............)))))))))))))))........))))))).. model uucggucaugcg-------------UuaAUGAcGgccug-gcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc ..(((((((....................{[[{((((({.(((.......---.........)))})))))}]]}..--....))))))).. target CUGGGUCCUCCUCCCUCCCCCCAGCCAAUUGACUUUGCUUGUCAGAAAUU---CCCUAAGAAGAUUGCAAAUGACAA--UCUCAGGACCCUG **** ^^^ **** ------- SECIS element -- id:2 -- grade:A ---- Chromosome = your_sequence Strand = + Positions = 68577 - 68652 Found by: Infernal (score=24.67) Covels (score=30.18) Stem2 length = 8 Apical loop length = 20 Insertion in stem2 = 0, 1 Free Energy = -17.9 Free energy of apical portion = -6.0 Type = 2 ..(((((((.......(((((((((((((((................)))))))).)))))))........))))))).. model uucggucaugcgUuaAUGAcGgccuggcccuAAAcC-cuuuuuggggcgggccag-gcCuGAUGuuuuuucaugaccggc (((({(((((--....{[[{(((({((((....(((((.....))))).))))}).)))}]]}..--...)))))})))) target GGAAUUGCAC--UUAAUGAUGACUACAUAGAAAGCCUUAAAGAAAGGCAUAUGCAUGUCUGAUGU--CAUGUGUAUUUUC **** ^^^ ****