------- SECIS element -- id:1 -- grade:B ----
 Chromosome = your_sequence Strand = - Positions = 14389 - 14315
 Found by:  Covels (score=7.21)
 Stem2 length = 8   Apical loop length = 13   Insertion in stem2 = 0, 0
 Free Energy = -5.6
 Type = 1

         ..(((((((........(((((((((((((((................)))))))))))))))........)))))))....
 model   uucggucaugcg-UuaAUGAcGgccuggcccuAAAcC-cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccg--gc
         ....({(((((......([[(([({({((((..........-----...))))})})]))]])...--.)))))})......
 target  CACAAUGUUUUCaGGUAUGAAGAGCGAUUACCAAGGCaUAU-----CAAGUGAACUUGCUGAAGGU--UGAAAUUUCAauUC
                          ****           ^^                         ****                   

------- SECIS element -- id:2 -- grade:B ----
 Chromosome = your_sequence Strand = - Positions = 100890 - 100814
 Found by:  Covels (score=6.04)
 Stem2 length = 9   Apical loop length = 15   Insertion in stem2 = 0, 0
 Free Energy = -11.4   Free energy of apical portion = -0.8
 Type = 2

         ..(((((((........(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcg-UuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ((({(((({((......([[{({((({(((((.....((....))..)))))})))})}]])..--..))}))))})))
 target  UAAUAUAUAGAUgGACAUGAAUUGGGUCAGGGCAACAGGUUGUCCAAUCCUGCCCUUGAGAAUC--UUUUAGUAUUUUG
                          ****            ^^                       ****                 

------- SECIS element -- id:3 -- grade:B ----
 Chromosome = your_sequence Strand = + Positions = 101252 - 101325
 Found by:  Covels (score=14.26)
 Stem2 length = 8   Apical loop length = 10   Insertion in stem2 = 0, 0
 Free Energy = -10.5
 Type = 1

         ..(((((((........(((((((((((((((...............))))))))))))))).........)))))))..
 model   uucggucaugcg-UuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuu-uuucaugaccggc
         ..(({({(((((.....{[[((({({(((({(........-----..)}))))})})))]]}.....-)))))})}))..
 target  CCCACAAGGAAAuUCAAUGAGGAAAUGAGCAGGAAGUUAA-----AAUCGCUCCUAUUUGACUGCUc-UUUUUAUUUGUU
                          ****            ^^                       ****                  

------- SECIS element -- id:4 -- grade:B ----
 Chromosome = your_sequence Strand = + Positions = 76316 - 76393
 Found by:  Covels (score=5.76)
 Stem2 length = 11   Apical loop length = 11   Insertion in stem2 = 0, 0
 Free Energy = -4.8
 Type = 1

         ..(((((((........((.(((((((((((((...............))))))))))))))).........)))))))..
 model   uucggucaugcg-UuaAUG-AcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuu-uuucaugaccggc
         .....({((((......{[.[(((((((({((((....--.......))))}))))))))]]}.....-.))))}).....
 target  UCGACUCAGUGCcCCAUUGcAAAUUAUUUCUGGAAAUC--CCCAUAGUUCAAAAAUAGUUGACUGUUg-CUGCUUAACAAG
                          ** **            ^^                       ****                  

------- SECIS element -- id:5 -- grade:B ----
 Chromosome = your_sequence Strand = - Positions = 98774 - 98698
 Found by:  Infernal (score=10.26)
 Stem2 length = 10   Apical loop length = 19   Insertion in stem2 = 0, 0
 Free Energy = -13.4   Free energy of apical portion = -0.5
 Type = 2

         ..(((((((.......((((((((((.(((((...................))))).))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccug-gcccuAAAcC----cuuuuuggggcgggc-caggcCuGAUGuuuuuucaugaccggc
         .({((((((---....([[((({((([((({(...(((((.....))))).)})))])))})))]])----....))))))}).
 target  UGUGCCUUU---UUAAUGAUGGUUUUAAUGUUAGAUUUCAAAUCCUGGGAGAUUAUGGAACCCAGAA----AGUUAAAGGUUUC
                         ****                                           ****                 

------- SECIS element -- id:6 -- grade:B ----
 Chromosome = your_sequence Strand = - Positions = 98921 - 98847
 Found by:  Infernal (score=10.86) Covels (score=4.23)
 Stem2 length = 10   Apical loop length = 18   Insertion in stem2 = 0, 1
 Free Energy = -7.8
 Type = 1

         ..(((((((.......(((((((((((((((..................))))))).))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC---cuuuuuggggcgggcca-ggcCuGAUGuuuuuucaugaccggc
         ...(((({(---....{[[{(((({((((((..................))))))}.))))}]]}----....)}))))...
 target  CCUAAUUAU---CUAUUGAAGUUGCUGUGCCAAAUCAGACAGUUAUAGAGGUACAAACAACAGAU----UCAAACAAUUCCU
                         ****           ^^^                           ****