------- SECIS element -- id:1 -- grade:C ----
 Chromosome = your_sequence Strand = - Positions = 63253 - 63176
 Found by:  Covels (score=6.45)
 Stem2 length = 10   Apical loop length = 12   Insertion in stem2 = 0, 0
 Free Energy = -6.8   Free energy of apical portion = -2.2
 Type = 2

         ..(((((((........(((((((((((((((...............)))))))))))))))..........)))))))..
 model   uucggucaugcg-UuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuu-u-uuucaugaccggc
         .(({{{({(........{[[(({{(((((((((.(((-.....))))))))))))}}))]]}......-.-.)})}}})).
 target  GUGCAUGAGUAUcUCUCUGAUCAGCUGCUGAAAAUCC-UGUUUGGAUUUCAGCAGGAGGGAUUUUcAg-C-CCCUCAAUGG
                          ****              ^^                     ****                   

------- SECIS element -- id:2 -- grade:B ----
 Chromosome = your_sequence Strand = - Positions = 188681 - 188604
 Found by:  Covels (score=6.58)
 Stem2 length = 9   Apical loop length = 14   Insertion in stem2 = 0, 0
 Free Energy = -4.7
 Type = 1

         ..(((((((........(((((((((((((((...............)))))))))))))))...........)))))))..
 model   uucggucaugcg-UuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuu--u-uuucaugaccggc
         ...(((([(((......{[[{(({(((({([(.....-.........)])}))))}))}]]}.......-.)))])))--).
 target  UCCGGGUAUUGUuCGCAUGAAAGCUUUGACAAGAAGC-UAUUUAUGGUGGCCAGGAUUAGAUAAAgcCa-UUGAGGCC--CA
                          ****            ^^                       ****                    

------- SECIS element -- id:3 -- grade:B ----
 Chromosome = your_sequence Strand = + Positions = 186531 - 186604
 Found by:  Covels (score=5.26)
 Stem2 length = 9   Apical loop length = 9   Insertion in stem2 = 0, 1
 Free Energy = -8.2
 Type = 1

         ..(((((((........(((((((((((((((...............))))))).))))))))..........)))))))..
 model   uucggucaugcg-UuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggcca-ggcCuGAUGuu-u-uuucaugaccggc
         ..((({{((........([[({(((((((({(.....-..-----..)}))))).)))})]])......-.-.))}})))..
 target  UACUUCCUGCAAaUUUUUGAAACGCAGAAUUAAAACA-AG-----AAUUAUUUUgGUGCUGAAUGAgUu-U-ACAAAAAGGU
                          ****           ^^^                        ****                   

------- SECIS element -- id:4 -- grade:B ----
 Chromosome = your_sequence Strand = + Positions = 179767 - 179844
 Found by:  Covels (score=11.29)
 Stem2 length = 10   Apical loop length = 14   Insertion in stem2 = 0, 0
 Free Energy = -13.7
 Type = 1

         ..(((((((........(((((((((((((((...............)))))))))))))))...........)))))))..
 model   uucggucaugcg-UuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuu--u-uuucaugaccggc
         ........(((......{[[{((((({(((((.....-.........)))))})))))}]]}.......-.)))....--..
 target  CCCGGGGAUCGUaCGCAUGAAAGCUCUGGCCAGGAGU-CACCUGUGGUGGCCUGGGUUAGACAAGgcAa-UCGAGGAA--AG
                          ****                                     ****                    

------- SECIS element -- id:5 -- grade:B ----
 Chromosome = your_sequence Strand = + Positions = 143939 - 144017
 Found by:  Covels (score=8.83)
 Stem2 length = 10   Apical loop length = 17   Insertion in stem2 = 0, 0
 Free Energy = -8.4   Free energy of apical portion = -1.0
 Type = 2

         ..(((((((........(((((((((((((((.....................)))))))))))))))..........)))))))..
 model   uucggucaugcg-UuaAUGAcGgccuggcccuAAAcC------cuuuuuggggcgggccaggcCuGAUGuu-u-uuucaugaccggc
         (({([{(((........([[{((((((((((------...(((...))).....))))))))))}]])......-.-.)))}])}))
 target  GUCAAAUAUCCGaAUUUUGAUUACUUAACGA------ugggcaUGCUGCAAUGGUUGUUAAGUGUGAAAAAcUg-C-CAUAAGUCAC
                          ****                                           ****                   

------- SECIS element -- id:6 -- grade:B ----
 Chromosome = your_sequence Strand = + Positions = 96525 - 96605
 Found by:  Covels (score=6.36)
 Stem2 length = 10   Apical loop length = 17   Insertion in stem2 = 0, 0
 Free Energy = -23.0   Free energy of apical portion = -4.0
 Type = 2

         ..(((((((........((((((((((.(((((.....................))))).))))))))))..........)))))))..
 model   uucggucaugcg-UuaAUGAcGgccug-gcccuAAAcC------cuuuuuggggcgggc-caggcCuGAUGuu-u-uuucaugaccggc
         ..([((([((((.....([[{(([({(([(((------.....((((...)))).)))]))})]))}]])......-))))])))]-).
 target  CAUAGCUAGUCUgAAAAUGAGACAUCCuACCU------auauugCCCUUUGGGUGGGGGaGAAGGUGGAAGAAaAg-GGAUGAGUG-AA
                          ****                                             ****                   

------- SECIS element -- id:7 -- grade:B ----
 Chromosome = your_sequence Strand = + Positions = 46992 - 47070
 Found by:  Covels (score=6.88)
 Stem2 length = 12   Apical loop length = 11   Insertion in stem2 = 0, 0
 Free Energy = -24.5   Free energy of apical portion = -2.7
 Type = 2

         ..(((((((........(((.(((((((.(((((...............))))).)))))))..)))............)))))))..
 model   uucggucaugcg-UuaAUGA-cGgccug-gcccuAAAcCcuuuuuggggcgggc-caggcCu--GAUGuu---u-uuucaugaccggc
         ....(([((........([[.((((((-(((((((((((--...)))))))))))-))))))..]])........-...))]----))
 target  UCAGGAAUUCUGgGAGUUGAnAGAAUU-cCUGAGCCAGC--UAUGCUGGCUCAGg-AAUUCUggGAGUUGaagUc-CACGAG----UC
                          *** *                                       *  ***                     

------- SECIS element -- id:8 -- grade:C ----
 Chromosome = your_sequence Strand = + Positions = 29364 - 29439
 Found by:  Covels (score=5.97)
 Stem2 length = 8   Apical loop length = 12   Insertion in stem2 = 0, 0
 Free Energy = -4.9
 Type = 1

         ..(((((((........(((((((((((((((...............))))))))))))))).........)))))))..
 model   uucggucaugcg-UuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuu-uuucaugaccggc
         .....(([(........([[{{(((({({(((.....---.......)))})}))))}}]]).....-...)])).....
 target  UAUCCCUAAGUAcACUAGGACAGAGGCUUUUAAAAUU---UUCUUUCUAACAACCUCCUGAUGAUCc-AGGUGGGUUUUU
                          ****           ^^^                       ****                  

------- SECIS element -- id:9 -- grade:B ----
 Chromosome = your_sequence Strand = - Positions = 9059 - 8978
 Found by:  Infernal (score=17.21) Covels (score=9.02)
 Stem2 length = 10   Apical loop length = 20   Insertion in stem2 = 0, 0
 Free Energy = -8.5   Free energy of apical portion = -0.5
 Type = 2

         ..(((((((.......(((((((((((((((....................)))))))))))))))...........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC-----cuuuuuggggcgggccaggcCuGAUGuu--u-uuucaugaccggc
         ...(({({(---....{[[(((((((({(((...((......)).......)))}))))))))]]}.......-...)})}))...
 target  UGUAAUAUG---UGAGUGAAAUCCCAUCUUUAAAGCCUAUUAGCAUCUUACAGAAAUGGGAUUGACAACAGCA-ACUCCUUUUCAG
                         ****           ^^^                            ****                    

------- SECIS element -- id:10 -- grade:A ----
 Chromosome = your_sequence Strand = - Positions = 48471 - 48396
 Found by:  Infernal (score=25.86) Covels (score=18.87)
 Stem2 length = 10   Apical loop length = 18   Insertion in stem2 = 0, 0
 Free Energy = -17.9   Free energy of apical portion = -1.6
 Type = 2

         ..(((((((.......(((((((((((((((................)))))))))))))))..........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC-cuuuuuggggcgggccaggcCuGAUGuu-u-uuucaugaccggc
         ...(((({(---....([[{((((((((((.....(((.....)))..))))))))))}]])......-.-.)}))))...
 target  GCUGGAGCA---UUCAUGAUGAGAUAUGAUGAAGUGGGGUAAACUCUGGUCGUAUCUCUGAAACUGCC-G-CUCCUCCUUU
                         ****           ^^                         ****