------- SECIS element -- id:1 -- grade:B ----
 Chromosome = your_sequence Strand = - Positions = 16872 - 16790
 Found by:  Covels (score=6.3)
 Stem2 length = 11   Apical loop length = 14   Insertion in stem2 = 0, 1
 Free Energy = -4.3
 Type = 1

         ..(((((((........((((((((((.((.(((...............))).)).)).))))))))..........)))))))..
 model   uucggucaugcg-UuaAUGAcGgccug-gc-ccuAAAcCcuuuuuggggcgg-gc-ca-ggcCuGAUGuu--uuuucaugaccggc
         .(((({(..........([[((((((({{([(((.....-.........)))])}})).)))))]]).....--.....)})))).
 target  UUUGUUUUAUCUaAAAAUGAAAAGAAUuCUgACUAAAAU-GCAUGCAUCAGUaACuAUcUCUUUGAAGAAgg--CAGAUGCAUAGU
                          ****             ^^^                          ****                   

------- SECIS element -- id:2 -- grade:C ----
 Chromosome = your_sequence Strand = - Positions = 105600 - 105524
 Found by:  Covels (score=5.16)
 Stem2 length = 8   Apical loop length = 11   Insertion in stem2 = 0, 2
 Free Energy = -6.6   Free energy of apical portion = -3.5
 Type = 2

         ..(((((((........((((((((((.(((((.................))))).)))))))))).........)))))))..
 model   uucggucaugcg-UuaAUGAcGgccug-gcccuAAAcC--cuuuuuggggcgggc-caggcCuGAUGuuu-uuucaugaccggc
         .....((({(((.....([[({((({({((((------((((...)))))..)))})})))})]]).....-)))}))).....
 target  AUGUAUGUAAGGaUUAAUGAUAUUAAUaGUUG------uaGAGUUUCUACAAAACcAAUAGAGGAGCAUUc-CUUAAUACCAGG
                          ****                                         ****                  

------- SECIS element -- id:3 -- grade:B ----
 Chromosome = your_sequence Strand = + Positions = 85112 - 85187
 Found by:  Infernal (score=14.69) Covels (score=5.42)
 Stem2 length = 9   Apical loop length = 22   Insertion in stem2 = 0, 0
 Free Energy = -9.7
 Type = 1

         ..(((((((.......(((((((((((((((..................)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC---cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ....((({(---....([[((((((((((......................))))))))))]])..--....)})))....
 target  UUGAAUCAU---UUAGUGAAAGUUGAUUGGUAAUUCUGUCCUUCAUUAAUGCAGUUAACUUGAAAA--CUUCAAGAUGGAU
                         ****           ^^                           ****                 

------- SECIS element -- id:4 -- grade:B ----
 Chromosome = your_sequence Strand = - Positions = 45398 - 45316
 Found by:  Infernal (score=25.18) Covels (score=11.85)
 Stem2 length = 9   Apical loop length = 18   Insertion in stem2 = 0, 0
 Free Energy = -26.4
 Type = 1

         ..(((((((..........(((((((((((((((................)))))))))))))))..........)))))))..
 model   uucggucaugcg---UuaAUGAcGgccuggcccuAAAcC-cuuuuuggggcgggccaggcCuGAUGuu-u-uuucaugaccggc
         .(((((((((((.......([[(({[(((((((..................)))))))]}))]])......-))))))))))).
 target  CCUACUUUUCUGUACUCAAUGAAGUAUGCAGUGUAACCUAAAUAUUACAGUCACUGCAGUCUGAAACUGUU-CAGAAAAGUAGU
                            ****           ^^                         ****