Command line: [exonerate -m p2g --showtargetgff -q eEFsecn/eEFsecn_U.fa -t eEFsecn/SUBSEQ/KB228921.1_0_subseq.txt --exhaustive yes]
Hostname: [luke]

C4 Alignment:
------------
         Query:  eEFsec
        Target: KB228921.1:subseq(4245517,25221) Odobenus rosmarus divergens isolate Ivan unplaced genomic scaffold Scaffold44, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 365
   Query range: 0 -> 113
  Target range: 25221 -> 6948

     1 : SerLeuLeuAlaGlyAlaGlnIleIleAspLeuMetMetLeuValIleAspValThrLys :    20
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         SerLeuLeuAlaGlyAlaGlnIleIleAspLeuMetMetLeuValIleAspValThrLys
 25221 : tctctccttgcagGGGCCCAGATCATTGATCTGATGATGCTGGTCATTGATGTGACCAAA : 25164

    21 : GlyMetGlnThrGlnSerAlaGluCysLeuValIleGlyGlnIleAlaCysGlnLysLeu :    40
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         GlyMetGlnThrGlnSerAlaGluCysLeuValIleGlyGlnIleAlaCysGlnLysLeu
 25163 : GGGATGCAGACCCAGTCAGCAGAGTGCCTTGTGATTGGGCAGATTGCCTGCCAGAAGCTG : 25104

    41 : ValValValLeuAsnLysIleAspLeuLeuAlaGluGlyLysArgGlnAlaAlaIleAsp :    60
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         ValValValLeuAsnLysIleAspLeuLeuAlaGluGlyLysArgGlnAlaAlaIleAsp
 25103 : GTTGTGGTGCTGAACAAAATAGACCTCTTGGCTGAAGGGAAGAGACAGGCAGCGATTGAT : 25044

    61 : LysMetThrLysLysMetGlnLysThrLeuGluAsnThr{Ly}  >>>> Target Int :    74
         |||||||||||||||||||||!:!|||||||||||||||{||}            441 b
         LysMetThrLysLysMetGlnArgThrLeuGluAsnThr{Ly}++               
 25043 : AAAATGACCAAGAAAATGCAGAGGACCCTGGAGAACACC{AA}gt............... : 24998

    75 : ron 1 >>>>  {s}Phe{A}  >>>> Target Intron 2 >>>>  {rg}GlyAla :    78
         p           {|}|||{ }           7847 bp           {!!}!.!|||
                   ++{s}Phe{T}++                         ++{rp}AlaAla
 24997 : ..........ag{A}TTC{T}gt.........................ag{GG}GCTGCT : 16702

    79 : ProIleIleSerValAlaAlaLysProGlyGlyProGluAlaProGluThrGlu  >>>> :    97
           !:!!  !! !  !  !  !|||||||||..!|||!  !.!  !.!...!:!!      
         GluLeuTyrPheCysLeu***LysProGlySerProValValTrpHisValGln+-    
 16701 : GAACTTTACTTCTGCCTCTAGAAGCCAGGATCCCCAGTTGTGTGGCATGTTCAGga.... : 16643

    98 :  Target Intron 3 >>>>  AlaProGlnGlyIleSerGluLeuIleGluLeuLeuT :   109
              9646 bp           ||||||......:::......|||:::|||:::|||:
                              ++AlaProHisSerValGlySerLeuLeuGluIleLeuS
 16642 : .....................aggctccgcactcagtggggagcctgcttgagattctct :  6963

   110 : hrSerGlnIlePro :   113
         ::      :::|||
         erLeuProLeuPro
  6962 : ctctccctctgccc :  6949

vulgar:  0 113 . KB228921.1:subseq(4245517,25221) 25221 6948 - 365 M 73 219 S 0 2 5 0 2 I 0 437 3 0 2 S 1 1 M 1 3 S 0 1 5 0 2 I 0 7843 3 0 2 S 1 2 M 20 60 5 0 2 I 0 9642 3 0 2 M 17 51
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2015-11-26
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
KB228921.1:subseq(4245517,25221)	exonerate:protein2genome:local	gene	6949	25221	365	-	.	gene_id 1 ; sequence  ; gene_orientation +
KB228921.1:subseq(4245517,25221)	exonerate:protein2genome:local	cds	25001	25221	.	-	.	
KB228921.1:subseq(4245517,25221)	exonerate:protein2genome:local	exon	25001	25221	.	-	.	insertions 0 ; deletions 0
KB228921.1:subseq(4245517,25221)	exonerate:protein2genome:local	splice5	24999	25000	.	-	.	intron_id 1 ; splice_site "GT"
KB228921.1:subseq(4245517,25221)	exonerate:protein2genome:local	intron	24560	25000	.	-	.	intron_id 1
KB228921.1:subseq(4245517,25221)	exonerate:protein2genome:local	splice3	24560	24561	.	-	.	intron_id 0 ; splice_site "AG"
KB228921.1:subseq(4245517,25221)	exonerate:protein2genome:local	cds	24555	24559	.	-	.	
KB228921.1:subseq(4245517,25221)	exonerate:protein2genome:local	exon	24555	24559	.	-	.	insertions 0 ; deletions 0
KB228921.1:subseq(4245517,25221)	exonerate:protein2genome:local	splice5	24553	24554	.	-	.	intron_id 2 ; splice_site "GT"
KB228921.1:subseq(4245517,25221)	exonerate:protein2genome:local	intron	16708	24554	.	-	.	intron_id 2
KB228921.1:subseq(4245517,25221)	exonerate:protein2genome:local	splice3	16708	16709	.	-	.	intron_id 1 ; splice_site "AG"
KB228921.1:subseq(4245517,25221)	exonerate:protein2genome:local	cds	16646	16707	.	-	.	
KB228921.1:subseq(4245517,25221)	exonerate:protein2genome:local	exon	16646	16707	.	-	.	insertions 0 ; deletions 0
KB228921.1:subseq(4245517,25221)	exonerate:protein2genome:local	splice5	16644	16645	.	-	.	intron_id 3 ; splice_site "GA"
KB228921.1:subseq(4245517,25221)	exonerate:protein2genome:local	intron	7000	16645	.	-	.	intron_id 3
KB228921.1:subseq(4245517,25221)	exonerate:protein2genome:local	splice3	7000	7001	.	-	.	intron_id 2 ; splice_site "ag"
KB228921.1:subseq(4245517,25221)	exonerate:protein2genome:local	cds	6949	6999	.	-	.	
KB228921.1:subseq(4245517,25221)	exonerate:protein2genome:local	exon	6949	6999	.	-	.	insertions 0 ; deletions 0
KB228921.1:subseq(4245517,25221)	exonerate:protein2genome:local	similarity	6949	25221	365	-	.	alignment_id 1 ; Query  ; Align 25222 1 219 ; Align 24559 75 3 ; Align 16706 77 60 ; Align 7000 97 51
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis