Command line: [exonerate -m p2g --showtargetgff -q TR3/TR3_U.fa -t TR3/SUBSEQ/KB229706.1_1_subseq.txt --exhaustive yes]
Hostname: [luke]

C4 Alignment:
------------
         Query:  TR3
        Target: KB229706.1:subseq(807941,25134) Odobenus rosmarus divergens isolate Ivan unplaced genomic scaffold Scaffold829, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 272
   Query range: 0 -> 66
  Target range: 25134 -> 13468

     1 : ArgValIleGlyPheHisValLeuGlyProAsnAlaGlyGluValThrGlnGlyPheAla :    20
         ||||||:!:|||||||||||||||||||||||||||||||||||||||||||||||||||
         ArgValValGlyPheHisValLeuGlyProAsnAlaGlyGluValThrGlnGlyPheAla
 25134 : CGTGTTGTGGGCTTCCACGTACTGGGTCCAAATGCTGGAGAAGTGACACAAGGCTTTGCA : 25077

    21 : AlaAlaMetLysCysGlyLeuThrLysGlnLeuLeuAspAspThrIleGlyIleHisPro :    40
         ||||||:!:||||||||||||||||||:!!! !||||||..!||||||||||||||||||
         AlaAlaLeuLysCysGlyLeuThrLysLysGlnLeuAspSerThrIleGlyIleHisPro
 25076 : GCTGCCCTCAAGTGTGGACTGACCAAAAAGCAGCTGGACAGTACCATTGGAATCCACCCC : 25017

    41 : ThrCysGlyGlu  >>>> Target Intron 1 >>>>  ValPheThrThrLeuGluI :    51
         ..!|||!.!|||           11468 bp          |||||||||||||||..!:
         ValCysAlaGlu++                         ++ValPheThrThrLeuSerV
 25016 : GTCTGTGCAGAGgt.........................agGTATTCACGACTCTGTCGG : 13516

    52 : leThrLysSerSerGlyLeuAspIleThrGlnLysGlyCysUnkGly :    66
         !:|||||| !!||||||  !..!|||  !|||   ||||||   |||
         alThrLysArgSerGlyGlySerIleLeuGlnAlaGlyCys***Gly
 13515 : TGACCAAGCGCTCTGGGGGAAGCATCCTCCAGGCCGGCTGCTGAGGT : 13469

vulgar:  0 66 . KB229706.1:subseq(807941,25134) 25134 13468 - 272 M 44 132 5 0 2 I 0 11464 3 0 2 M 22 66
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2015-11-26
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
KB229706.1:subseq(807941,25134)	exonerate:protein2genome:local	gene	13469	25134	272	-	.	gene_id 1 ; sequence  ; gene_orientation +
KB229706.1:subseq(807941,25134)	exonerate:protein2genome:local	cds	25003	25134	.	-	.	
KB229706.1:subseq(807941,25134)	exonerate:protein2genome:local	exon	25003	25134	.	-	.	insertions 0 ; deletions 0
KB229706.1:subseq(807941,25134)	exonerate:protein2genome:local	splice5	25001	25002	.	-	.	intron_id 1 ; splice_site "GT"
KB229706.1:subseq(807941,25134)	exonerate:protein2genome:local	intron	13535	25002	.	-	.	intron_id 1
KB229706.1:subseq(807941,25134)	exonerate:protein2genome:local	splice3	13535	13536	.	-	.	intron_id 0 ; splice_site "AG"
KB229706.1:subseq(807941,25134)	exonerate:protein2genome:local	cds	13469	13534	.	-	.	
KB229706.1:subseq(807941,25134)	exonerate:protein2genome:local	exon	13469	13534	.	-	.	insertions 0 ; deletions 0
KB229706.1:subseq(807941,25134)	exonerate:protein2genome:local	similarity	13469	25134	272	-	.	alignment_id 1 ; Query  ; Align 25135 1 132 ; Align 13535 45 66
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis