Command line: [exonerate -m p2g --showtargetgff -q TR1n/TR1n_U.fa -t TR1n/SUBSEQ/KB229706.1_1_subseq.txt --exhaustive yes]
Hostname: [luke]

C4 Alignment:
------------
         Query:  TR1
        Target: KB229706.1:subseq(814140,25113) Odobenus rosmarus divergens isolate Ivan unplaced genomic scaffold Scaffold829, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 597
   Query range: 0 -> 115
  Target range: 25113 -> 7332

     1 : GlnCysAspTyrGluAsnValProThrThrValPheThrProLeuGluTyrGlyAlaCys :    20
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         GlnCysAspTyrGluAsnValProThrThrValPheThrProLeuGluTyrGlyAlaCys
 25113 : CAGTGTGACTATGAGAATGTTCCAACGACTGTGTTTACTCCTTTGGAATATGGTGCCTGT : 25056

    21 : GlyLeuSerGluGluLysAlaValGluLysPheGlyGluGluAsnIleGlu  >>>> Ta :    38
         |||||||||||||||!:!|||||||||   |||||||||||||||||||||         
         GlyLeuSerGluGluArgAlaValGluThrPheGlyGluGluAsnIleGlu++       
 25055 : GGTCTTTCTGAGGAGAGAGCTGTGGAGacatttggggaagaaaatattgaggt....... : 25000

    39 : rget Intron 1 >>>>  ValTyrHisSerTyrPheTrpProLeuGluTrpThrIleP :    51
           2412 bp           ||||||||||||||||||||||||||||||||||||||||
                           ++ValTyrHisSerTyrPheTrpProLeuGluTrpThrIleP
 24999 : ..................agGTTTACCATAGTTACTTTTGGCCGCTGGAGTGGACGATTC : 22551

    52 : roSerArgAspAsnAsnLysCysTyrAlaLysIleIleCysAsnIleLysAspAsn  >> :    70
         ||||||||||||||||||||||||||||||||:!!|||||||||||||||||||||    
         roSerArgAspAsnAsnLysCysTyrAlaLysValIleCysAsnIleLysAspAsn++  
 22550 : CATCAAGAGATAACAACAAATGTTATGCAAAAGTAATCTGTAATATCAAAGACAACgt.. : 22492

    71 : >> Target Intron 2 >>>>  GluArgValValGlyPheHisValLeuGlyProAs :    81
                3556 bp           |||||||||||||||||||||||||||||||||||
                                ++GluArgValValGlyPheHisValLeuGlyProAs
 22491 : .......................agGAACGTGTTGTGGGCTTCCACGTACTGGGTCCAAA : 18905

    82 : nAlaGlyGluValThrGlnGlyPheAlaAlaAlaLeuLysCysGlyLeuThrLysMetGl :   101
         |||||||||||||||||||||||||||||||||||||||||||||||||||||||! !||
         nAlaGlyGluValThrGlnGlyPheAlaAlaAlaLeuLysCysGlyLeuThrLysLysGl
 18904 : TGCTGGAGAAGTGACACAAGGCTTTGCAGCTGCCCTCAAGTGTGGACTGACCAAAAAGCA : 18845

   102 : nLeuAspSerThrIleGlyIleHisProValCysAlaGlu  >>>> Target Intron :   115
         ||||||||||||||||||||||||||||||||||||||||           11468 bp 
         nLeuAspSerThrIleGlyIleHisProValCysAlaGlu++                  
 18844 : GCTGGACAGTACCATTGGAATCCACCCCGTCTGTGCAGAGgt.................. : 18801

   116 :  3 >>>>  Val :   115
                  |||
                ++Val
 18800 : .......agGTA :  7333

vulgar:  0 115 . KB229706.1:subseq(814140,25113) 25113 7332 - 597 M 37 111 5 0 2 I 0 2408 3 0 2 M 32 96 5 0 2 I 0 3552 3 0 2 M 45 135 5 0 2 I 0 11464 3 0 2 M 1 3
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2015-11-26
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
KB229706.1:subseq(814140,25113)	exonerate:protein2genome:local	gene	7333	25113	597	-	.	gene_id 1 ; sequence  ; gene_orientation +
KB229706.1:subseq(814140,25113)	exonerate:protein2genome:local	cds	25003	25113	.	-	.	
KB229706.1:subseq(814140,25113)	exonerate:protein2genome:local	exon	25003	25113	.	-	.	insertions 0 ; deletions 0
KB229706.1:subseq(814140,25113)	exonerate:protein2genome:local	splice5	25001	25002	.	-	.	intron_id 1 ; splice_site "gt"
KB229706.1:subseq(814140,25113)	exonerate:protein2genome:local	intron	22591	25002	.	-	.	intron_id 1
KB229706.1:subseq(814140,25113)	exonerate:protein2genome:local	splice3	22591	22592	.	-	.	intron_id 0 ; splice_site "AG"
KB229706.1:subseq(814140,25113)	exonerate:protein2genome:local	cds	22495	22590	.	-	.	
KB229706.1:subseq(814140,25113)	exonerate:protein2genome:local	exon	22495	22590	.	-	.	insertions 0 ; deletions 0
KB229706.1:subseq(814140,25113)	exonerate:protein2genome:local	splice5	22493	22494	.	-	.	intron_id 2 ; splice_site "GT"
KB229706.1:subseq(814140,25113)	exonerate:protein2genome:local	intron	18939	22494	.	-	.	intron_id 2
KB229706.1:subseq(814140,25113)	exonerate:protein2genome:local	splice3	18939	18940	.	-	.	intron_id 1 ; splice_site "AG"
KB229706.1:subseq(814140,25113)	exonerate:protein2genome:local	cds	18804	18938	.	-	.	
KB229706.1:subseq(814140,25113)	exonerate:protein2genome:local	exon	18804	18938	.	-	.	insertions 0 ; deletions 0
KB229706.1:subseq(814140,25113)	exonerate:protein2genome:local	splice5	18802	18803	.	-	.	intron_id 3 ; splice_site "GT"
KB229706.1:subseq(814140,25113)	exonerate:protein2genome:local	intron	7336	18803	.	-	.	intron_id 3
KB229706.1:subseq(814140,25113)	exonerate:protein2genome:local	splice3	7336	7337	.	-	.	intron_id 2 ; splice_site "AG"
KB229706.1:subseq(814140,25113)	exonerate:protein2genome:local	cds	7333	7335	.	-	.	
KB229706.1:subseq(814140,25113)	exonerate:protein2genome:local	exon	7333	7335	.	-	.	insertions 0 ; deletions 0
KB229706.1:subseq(814140,25113)	exonerate:protein2genome:local	similarity	7333	25113	597	-	.	alignment_id 1 ; Query  ; Align 25114 1 111 ; Align 22591 38 96 ; Align 18939 70 135 ; Align 7336 115 3
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis