Command line: [exonerate -m p2g --showtargetgff -q SelU2n/SelU2n_U.fa -t SelU2n/SUBSEQ/KB229214.1_2_subseq.txt --exhaustive yes]
Hostname: [luke]

C4 Alignment:
------------
         Query:  SelX2
        Target: KB229214.1:subseq(218021,25125) Odobenus rosmarus divergens isolate Ivan unplaced genomic scaffold Scaffold337, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 740
   Query range: 0 -> 149
  Target range: 17880 -> 25125

     1 : IleCysThrCysProPhePheLeuLeuLysGluAlaAsnValThrLeuIleValIleGly :    20
         ||||||||||||||||||||||||||||||||||||:!!|||||||||||||||||||||
         IleCysThrCysProPhePheLeuLeuLysGluAlaAspValThrLeuIleValIleGly
 17881 : ATATGTACCTGTCCCTTTTTTCTCCTAAAGGAAGCAGATGTCACCCTAATAGTGATTGGA : 17938

    21 : GlnSerSerTyrHisHisIleGlu  >>>> Target Intron 1 >>>>  ProPheC :    31
         ||||||||||||||||||||||||            164 bp           |||||||
         GlnSerSerTyrHisHisIleGlu++                         ++ProPheC
 17939 : CAGTCATCCTACCATCATATCGAGgt.........................agcCTTTCT : 18135

    32 : ysLysLeuThrGlyTyrSerHisGluIleTyrValAspProGluArgGluIleTyrLysL :    51
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         ysLysLeuThrGlyTyrSerHisGluIleTyrValAspProGluArgGluIleTyrLysL
 18136 : GCAAACTGACTGGATATTCTCATGAAATCTATGTTGATCctgagagagaaatttataaaa : 18195

    52 : ysLeuGlyMetLysArgGlyGluGluIleAlaProSer{G}  >>>> Target Intro :    64
         |||||||||||||||||||||||||||||||| !!|||{|}           4148 bp 
         ysLeuGlyMetLysArgGlyGluGluIleAlaSerSer{G}++                 
 18196 : aattggGAATGAAAAGAGGTGAAGAAATTGCCTCCTCA{G}gt................. : 18237

    65 : n 2 >>>>  {ly}LysSerProHisIleLysSerAsnValLeuSerGlySerIleGlnS :    80
                   {||}||||||||||||||||||||||||:::|||||||||||||||!:!|
                 ++{ly}LysSerProHisIleLysSerAsnIleLeuSerGlySerIleArgS
 18238 : ........ag{GA}AAGAGCCCccatataaaatcaaatatactcTCAGGAAGCATTCGGA : 22430

    81 : erLeuTrpArgAlaValThrGlyProLeuPheAspPheGlnGlyAspProAlaGlnGlnG :   100
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         erLeuTrpArgAlaValThrGlyProLeuPheAspPheGlnGlyAspProAlaGlnGlnG
 22431 : GCCTGTGGAGGGCAGTGACTGGCCCTCTTTTTGATTTTCAAGGAGACCCTGCTCAGCAAG : 22490

   101 : lyGlyThrLeuIleLeuGlyPro{G}  >>>> Target Intron 3 >>>>  {ly}A :   109
         |||||||||||||||||||||||{|}           2486 bp           {||}|
         lyGlyThrLeuIleLeuGlyPro{G}++                         ++{ly}A
 22491 : GCGGAACCCTCATCTTAGGTCCA{G}gt.........................ag{GT}A : 25003

   110 : snAsnIleHisPheIleHisArgAspArgTyrArgLeuAspHisLysProIleAsnSerV :   129
         ||||||||||||||||||||||||||!:! !!||||||||||||||||||||||||||||
         snAsnIleHisPheIleHisArgAspLysAsnArgLeuAspHisLysProIleAsnSerV
 25004 : ACAACATCCATTTTATACACCGTGATAAAAATAGGTTGGATCACAAACCCATCAACTCTG : 25063

   130 : alLeuGlnLeuValGlyValGlnHisValAspPheThrSerArgSerSerValIleHisV :   149
         |||||||||||||||||||||||||||||||||||||||||||| !!|||||||||||||
         alLeuGlnLeuValGlyValGlnHisValAspPheThrSerArgProSerValIleHisV
 25064 : TTTTACAGCTTGTAGGAGTTCAGCATGTGGACTTTACAAGCAGACCTTCAGTTATCCATG : 25123

   150 : al :   149
         ||
         al
 25124 : TG : 25125

vulgar:  0 149 . KB229214.1:subseq(218021,25125) 17880 25125 + 740 M 28 84 5 0 2 I 0 160 3 0 2 M 35 105 S 0 1 5 0 2 I 0 4144 3 0 2 S 1 2 M 43 129 S 0 1 5 0 2 I 0 2482 3 0 2 S 1 2 M 41 123
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2015-11-26
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
KB229214.1:subseq(218021,25125)	exonerate:protein2genome:local	gene	17881	25125	740	+	.	gene_id 1 ; sequence  ; gene_orientation +
KB229214.1:subseq(218021,25125)	exonerate:protein2genome:local	cds	17881	17964	.	+	.	
KB229214.1:subseq(218021,25125)	exonerate:protein2genome:local	exon	17881	17964	.	+	.	insertions 0 ; deletions 0
KB229214.1:subseq(218021,25125)	exonerate:protein2genome:local	splice5	17965	17966	.	+	.	intron_id 1 ; splice_site "GT"
KB229214.1:subseq(218021,25125)	exonerate:protein2genome:local	intron	17965	18128	.	+	.	intron_id 1
KB229214.1:subseq(218021,25125)	exonerate:protein2genome:local	splice3	18127	18128	.	+	.	intron_id 0 ; splice_site "ag"
KB229214.1:subseq(218021,25125)	exonerate:protein2genome:local	cds	18129	18234	.	+	.	
KB229214.1:subseq(218021,25125)	exonerate:protein2genome:local	exon	18129	18234	.	+	.	insertions 0 ; deletions 0
KB229214.1:subseq(218021,25125)	exonerate:protein2genome:local	splice5	18235	18236	.	+	.	intron_id 2 ; splice_site "GT"
KB229214.1:subseq(218021,25125)	exonerate:protein2genome:local	intron	18235	22382	.	+	.	intron_id 2
KB229214.1:subseq(218021,25125)	exonerate:protein2genome:local	splice3	22381	22382	.	+	.	intron_id 1 ; splice_site "AG"
KB229214.1:subseq(218021,25125)	exonerate:protein2genome:local	cds	22383	22514	.	+	.	
KB229214.1:subseq(218021,25125)	exonerate:protein2genome:local	exon	22383	22514	.	+	.	insertions 0 ; deletions 0
KB229214.1:subseq(218021,25125)	exonerate:protein2genome:local	splice5	22515	22516	.	+	.	intron_id 3 ; splice_site "GT"
KB229214.1:subseq(218021,25125)	exonerate:protein2genome:local	intron	22515	25000	.	+	.	intron_id 3
KB229214.1:subseq(218021,25125)	exonerate:protein2genome:local	splice3	24999	25000	.	+	.	intron_id 2 ; splice_site "AG"
KB229214.1:subseq(218021,25125)	exonerate:protein2genome:local	cds	25001	25125	.	+	.	
KB229214.1:subseq(218021,25125)	exonerate:protein2genome:local	exon	25001	25125	.	+	.	insertions 0 ; deletions 0
KB229214.1:subseq(218021,25125)	exonerate:protein2genome:local	similarity	17881	25125	740	+	.	alignment_id 1 ; Query  ; Align 17881 1 84 ; Align 18129 29 105 ; Align 22385 65 129 ; Align 25003 109 123
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis