Command line: [exonerate -m p2g --showtargetgff -q SelS/SelS_U.fa -t SelS/SUBSEQ/KB229132.1_0_subseq.txt --exhaustive yes]
Hostname: [luke]

C4 Alignment:
------------
         Query:  SelS
        Target: KB229132.1:subseq(82896,50086) Odobenus rosmarus divergens isolate Ivan unplaced genomic scaffold Scaffold255, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 258
   Query range: 0 -> 53
  Target range: 49231 -> 50086

     1 : MetGluArgAspGlyGlnGlnLeuSerAlaArgProAlaLeuGluThrGluGlyLeuArg :    20
         ||||||||||||||||||! !|||||||||||||||||||||||||||||||||!!!|||
         MetGluArgAspGlyGlnLeuLeuSerAlaArgProAlaLeuGluThrGluGlyPheArg
 49232 : ATGGAGCGGGACGGGCAGCTGCTGTCCGCGCGGCCGGCCCTGGAGACGGAGGGGTTTCGC : 49289

    21 : PheLeuHisValThr{V}  >>>> Target Intron 1 >>>>  {al}GlySerLeu :    29
         !:!||||||||||||{|}            696 bp           {||}|||||||||
         TyrLeuHisValThr{V}++                         ++{al}GlySerLeu
 49290 : TACCTGCACGTCACG{G}gt.........................ag{tg}ggctccctg : 50012

    30 : LeuAlaThrTyrGlyTrpTyrIleValPheSerCysIleLeuLeuTyrValValPheGln :    49
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         LeuAlaThrTyrGlyTrpTyrIleValPheSerCysIleLeuLeuTyrValValPheGln
 50013 : ctagcCACTTACGGCTGGTACATCGTCTTCAGCTGCATCCTTCTCTACGTGGTGTTTCAG : 50072

    50 : LysLeuSerThr :    53
         ||||||||||||
         LysLeuSerThr
 50073 : AAGCTTTCCACC : 50086

vulgar:  0 53 . KB229132.1:subseq(82896,50086) 49231 50086 + 258 M 25 75 S 0 1 5 0 2 I 0 692 3 0 2 S 1 2 M 27 81
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2015-11-27
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
KB229132.1:subseq(82896,50086)	exonerate:protein2genome:local	gene	49232	50086	258	+	.	gene_id 1 ; sequence  ; gene_orientation +
KB229132.1:subseq(82896,50086)	exonerate:protein2genome:local	cds	49232	49307	.	+	.	
KB229132.1:subseq(82896,50086)	exonerate:protein2genome:local	exon	49232	49307	.	+	.	insertions 0 ; deletions 0
KB229132.1:subseq(82896,50086)	exonerate:protein2genome:local	splice5	49308	49309	.	+	.	intron_id 1 ; splice_site "GT"
KB229132.1:subseq(82896,50086)	exonerate:protein2genome:local	intron	49308	50003	.	+	.	intron_id 1
KB229132.1:subseq(82896,50086)	exonerate:protein2genome:local	splice3	50002	50003	.	+	.	intron_id 0 ; splice_site "ag"
KB229132.1:subseq(82896,50086)	exonerate:protein2genome:local	cds	50004	50086	.	+	.	
KB229132.1:subseq(82896,50086)	exonerate:protein2genome:local	exon	50004	50086	.	+	.	insertions 0 ; deletions 0
KB229132.1:subseq(82896,50086)	exonerate:protein2genome:local	similarity	49232	50086	258	+	.	alignment_id 1 ; Query  ; Align 49232 1 75 ; Align 50006 27 81
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis