Command line: [exonerate -m p2g --showtargetgff -q SelR3n/SelR3n_U.fa -t SelR3n/SUBSEQ/KB229908.1_1_subseq.txt --exhaustive yes]
Hostname: [luke]

C4 Alignment:
------------
         Query:  SelR3
        Target: KB229908.1:subseq(1102038,25107) Odobenus rosmarus divergens isolate Ivan unplaced genomic scaffold Scaffold1031, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 419
   Query range: 9 -> 100
  Target range: 25107 -> 16917

    10 : SerGlySerGlyTrpProSerPheHisAspValIleSerSerAspAlaIleThrPheThr :    29
         |||!.! !!|||||||||||||||||||||||||||||||||||||||||||||||||||
         SerAlaProGlyTrpProSerPheHisAspValIleSerSerAspAlaIleThrPheThr
 25107 : TCTGCCCCAGGTTGGCCTTCATTCCACGATGTGATCAGTTCTGATGCAATCACATTCACG : 25050

    30 : AspAspPheSerTyrGlyMetHisArgValGluThrSerCysSerGln  >>>> Targe :    46
         ||||||||||||||||||||||||||||||||||||||||||||||||           7
         AspAspPheSerTyrGlyMetHisArgValGluThrSerCysSerGln++          
 25049 : GACGACTTTTCTTACGGGATGCACAGGGTGGAAACGAGCTGCTCTCAGgt.......... : 24997

    47 : t Intron 1 >>>>  CysGlyAlaHisLeuGlyHisIlePheAspAspGlyProArgP :    60
         920 bp           |||||||||||||||||||||||||||||||||||||||||||
                        ++CysGlyAlaHisLeuGlyHisIlePheAspAspGlyProArgP
 24996 : ...............agTGCGGCGCCCACCTTGGGCACATTTTCGATGACGGCCCTCGTC : 17037

    61 : roThrGlyLysArgTyrCysIleAsnSerAlaSerLeuSerPheThrProAlaAspSerG :    80
         ||||||||||||||||||||||||||||||||||||||||||||! !|||||||||   |
         roThrGlyLysArgTyrCysIleAsnSerAlaSerLeuSerPheMetProAlaAsp---G
 17036 : CCACCGGCAAAAGATACTGCATAAACTCGGCTTCCTTGTCCTTCATGCCGGCAGAC---G : 16980

    81 : lyArgGlyAlaGluGlyGlyArgGlyAlaGlySerProAlaGlnAlaAspAsnAlaGluL :   100
         ||!!!||||||:::||||||   |||...||||||||||||!  ! !|||!!.|||||||
         lySerGlyAlaGlnGlyGlySerGlyValGlySerProAlaProGluAspLysAlaGluL
 16979 : GCAGTGGTGCCCaggggggcagtggggtgggCAGCCCGGCCCCCGAGGACAAAGCGGAGC : 16920

   101 : eu :   100
         ||
         eu
 16919 : TG : 16918

vulgar:  9 100 . KB229908.1:subseq(1102038,25107) 25107 16917 - 419 M 36 108 5 0 2 I 0 7916 3 0 2 M 33 99 G 1 0 M 21 63
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2015-11-26
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
KB229908.1:subseq(1102038,25107)	exonerate:protein2genome:local	gene	16918	25107	419	-	.	gene_id 1 ; sequence  ; gene_orientation +
KB229908.1:subseq(1102038,25107)	exonerate:protein2genome:local	cds	25000	25107	.	-	.	
KB229908.1:subseq(1102038,25107)	exonerate:protein2genome:local	exon	25000	25107	.	-	.	insertions 0 ; deletions 0
KB229908.1:subseq(1102038,25107)	exonerate:protein2genome:local	splice5	24998	24999	.	-	.	intron_id 1 ; splice_site "GT"
KB229908.1:subseq(1102038,25107)	exonerate:protein2genome:local	intron	17080	24999	.	-	.	intron_id 1
KB229908.1:subseq(1102038,25107)	exonerate:protein2genome:local	splice3	17080	17081	.	-	.	intron_id 0 ; splice_site "ag"
KB229908.1:subseq(1102038,25107)	exonerate:protein2genome:local	cds	16918	17079	.	-	.	
KB229908.1:subseq(1102038,25107)	exonerate:protein2genome:local	exon	16918	17079	.	-	.	insertions 0 ; deletions 1
KB229908.1:subseq(1102038,25107)	exonerate:protein2genome:local	similarity	16918	25107	419	-	.	alignment_id 1 ; Query  ; Align 25108 10 108 ; Align 17080 46 99 ; Align 16981 80 63
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis