Command line: [exonerate -m p2g --showtargetgff -q SelM/SelM_U.fa -t SelM/SUBSEQ/KB228986.1_1_subseq.txt --exhaustive yes]
Hostname: [luke]

C4 Alignment:
------------
         Query:  SelM
        Target: KB228986.1:subseq(965995,25077) Odobenus rosmarus divergens isolate Ivan unplaced genomic scaffold Scaffold109, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 434
   Query range: 0 -> 90
  Target range: 22851 -> 25077

     1 : MetHisLeuProLeuProProProProLeuLeuLeuLeuLeuAlaAlaLeuAlaAlaAla :    20
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         MetHisLeuProLeuProProProProLeuLeuLeuLeuLeuAlaAlaLeuAlaAlaAla
 22852 : ATGCACCTCCCGCTGCCTCCACCgcccctgctgctgcttctcGCGGCACTCGCGGCCGCC : 22909

    21 : ValThrThrPheArgProAspTrpAsnArgLeuHisGlyLeuAlaArgAlaArgValGlu :    40
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         ValThrThrPheArgProAspTrpAsnArgLeuHisGlyLeuAlaArgAlaArgValGlu
 22910 : GTCACTACCTTCCGGCCCGACTGGAACCGTCTGCACGGCCTGGCCCGAGCCCGGGTAGAG : 22969

    41 :   >>>> Target Intron 1 >>>>  ThrCysGlyGlyUnkGlnLeuAsnArgLeuL :    51
                    1173 bp           ||||||||||||   ||||||||||||||||
         ++                         ++ThrCysGlyGly***GlnLeuAsnArgLeuL
 22970 : gt.........................agACCTGTGGGGGATGACAGCTGAATCGCCTGA : 24175

    52 : ysGlu  >>>> Target Intron 2 >>>>  ValLysAlaPheValThrGlnAspIl :    61
         |||||            426 bp           ||||||||||||||||||||||||||
         ysGlu++                         ++ValLysAlaPheValThrGlnAspIl
 24176 : AGGAGgt.........................agGTGAAGGCCTTCGTCACCCAGGATAT : 24631

    62 : eProLeu{Ty}  >>>> Target Intron 3 >>>>  {r}HisAsnMetValMetLy :    70
         |||||||{||}            357 bp           {|}||||||:!!||||||||
         eProLeu{Ty}++                         ++{r}HisAsnLeuValMetLy
 24632 : CCCTTTA{TA}gt.........................ag{T}CACAACCTGGTAATGAA : 25015

    71 : sHisLeuProGlyAlaAspProGluLeuValLeuLeuGlyHisArgTyrGluGluLeuGl :    90
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         sHisLeuProGlyAlaAspProGluLeuValLeuLeuGlyHisArgTyrGluGluLeuGl
 25016 : ACACCTTCCAGGGGCTGACCCAGAGCTCGTCCTGCTGGGCCACCGCTACGAAGAACTGGA : 25075

    91 : u :    90
         |
         u
 25076 : G : 25077

vulgar:  0 90 . KB228986.1:subseq(965995,25077) 22851 25077 + 434 M 40 120 5 0 2 I 0 1169 3 0 2 M 12 36 5 0 2 I 0 422 3 0 2 M 11 33 S 0 2 5 0 2 I 0 353 3 0 2 S 1 1 M 26 78
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2015-11-26
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
KB228986.1:subseq(965995,25077)	exonerate:protein2genome:local	gene	22852	25077	434	+	.	gene_id 1 ; sequence  ; gene_orientation +
KB228986.1:subseq(965995,25077)	exonerate:protein2genome:local	cds	22852	22971	.	+	.	
KB228986.1:subseq(965995,25077)	exonerate:protein2genome:local	exon	22852	22971	.	+	.	insertions 0 ; deletions 0
KB228986.1:subseq(965995,25077)	exonerate:protein2genome:local	splice5	22972	22973	.	+	.	intron_id 1 ; splice_site "GT"
KB228986.1:subseq(965995,25077)	exonerate:protein2genome:local	intron	22972	24144	.	+	.	intron_id 1
KB228986.1:subseq(965995,25077)	exonerate:protein2genome:local	splice3	24143	24144	.	+	.	intron_id 0 ; splice_site "AG"
KB228986.1:subseq(965995,25077)	exonerate:protein2genome:local	cds	24145	24180	.	+	.	
KB228986.1:subseq(965995,25077)	exonerate:protein2genome:local	exon	24145	24180	.	+	.	insertions 0 ; deletions 0
KB228986.1:subseq(965995,25077)	exonerate:protein2genome:local	splice5	24181	24182	.	+	.	intron_id 2 ; splice_site "GT"
KB228986.1:subseq(965995,25077)	exonerate:protein2genome:local	intron	24181	24606	.	+	.	intron_id 2
KB228986.1:subseq(965995,25077)	exonerate:protein2genome:local	splice3	24605	24606	.	+	.	intron_id 1 ; splice_site "AG"
KB228986.1:subseq(965995,25077)	exonerate:protein2genome:local	cds	24607	24641	.	+	.	
KB228986.1:subseq(965995,25077)	exonerate:protein2genome:local	exon	24607	24641	.	+	.	insertions 0 ; deletions 0
KB228986.1:subseq(965995,25077)	exonerate:protein2genome:local	splice5	24642	24643	.	+	.	intron_id 3 ; splice_site "GT"
KB228986.1:subseq(965995,25077)	exonerate:protein2genome:local	intron	24642	24998	.	+	.	intron_id 3
KB228986.1:subseq(965995,25077)	exonerate:protein2genome:local	splice3	24997	24998	.	+	.	intron_id 2 ; splice_site "AG"
KB228986.1:subseq(965995,25077)	exonerate:protein2genome:local	cds	24999	25077	.	+	.	
KB228986.1:subseq(965995,25077)	exonerate:protein2genome:local	exon	24999	25077	.	+	.	insertions 0 ; deletions 0
KB228986.1:subseq(965995,25077)	exonerate:protein2genome:local	similarity	22852	25077	434	+	.	alignment_id 1 ; Query  ; Align 22852 1 120 ; Align 24145 41 36 ; Align 24607 53 33 ; Align 25000 65 78
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis