Command line: [exonerate -m p2g --showtargetgff -q SelK/SelK_U.fa -t SelK/SUBSEQ/KB230026.1_0_subseq.txt --exhaustive yes] Hostname: [luke] C4 Alignment: ------------ Query: SelK Target: KB230026.1:subseq(299437,25185) Odobenus rosmarus divergens isolate Ivan unplaced genomic scaffold Scaffold1149, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 446 Query range: 0 -> 94 Target range: 25185 -> 24902 1 : MetValTyrIleSerAsnGlyGlnValLeuAspSerArgSerGlnSerProTrpArgLeu : 20 |||||||||||||||||||||||||||||||||||||||||||||||| !!||||||||| MetValTyrIleSerAsnGlyGlnValLeuAspSerArgSerGlnSerSerTrpArgLeu 25185 : ATGGTTTACATCTCGAATGGACAAGTATTGGACAGCCGGAGTCAGTCCTCATGGAGATTA : 25128 21 : SerLeuIleThrAspPhePheTrpGlyIleAlaGluPheValValLeuUnkUnkGlnThr : 40 |||||||||||||||||||||||||||||||||||||||||||||||| :::||| SerLeuIleThrAspPhePheTrpGlyIleAlaGluPheValValLeuPhePheLysThr 25127 : TCTTTGATAACAGATTTCTTCTGGGGAATAGCAgagtttgtggttttgtttttcaagact : 25068 41 : LeuLeuGlnGlnAspValLysLysArgArgGlyTyrGlyAsnSerSerAspSerArgTyr : 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| LeuLeuGlnGlnAspValLysLysArgArgGlyTyrGlyAsnSerSerAspSerArgTyr 25067 : CTGCTTCAGCAAGAtgtgaaaaagagaagaggataTGGAAACTCCTCTGATTCCAGATAT : 25008 61 : AspAspGlyArgGlyPro-ProGlyAsnProProArgArgMetGlyArgIleAsnHisLe : 80 ||||||||||||||||||#||||||||||||||||||||||||||||||||||||||||| AspAspGlyArgGlyPro#ProGlyAsnProProArgArgMetGlyArgIleAsnHisLe 25007 : GATGATGGAAGAgggccacccaggcaaccctcccAGAAGAATGGGTCGAATTAATCATCT : 24947 81 : uArgGlyProSerProProProMetAlaGlyGlyUnkGlyArg : 94 |||||||||||||||||||||||||||||||||| |||||| uArgGlyProSerProProProMetAlaGlyGly***GlyArg 24946 : ACGTGGCCCTAGTCCTCCTCCAATGGCTGGTGGATGAGGAAGG : 24903 vulgar: 0 94 . KB230026.1:subseq(299437,25185) 25185 24902 - 446 M 66 198 F 0 1 M 28 84 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-11-26 ##type DNA # # # seqname source feature start end score strand frame attributes # KB230026.1:subseq(299437,25185) exonerate:protein2genome:local gene 24903 25185 446 - . gene_id 1 ; sequence ; gene_orientation . KB230026.1:subseq(299437,25185) exonerate:protein2genome:local cds 24903 25185 . - . KB230026.1:subseq(299437,25185) exonerate:protein2genome:local exon 24903 25185 . - . insertions 0 ; deletions 0 ; frameshifts 1 KB230026.1:subseq(299437,25185) exonerate:protein2genome:local similarity 24903 25185 446 - . alignment_id 1 ; Query ; Align 25186 1 198 ; Align 24987 67 84 # --- END OF GFF DUMP --- # -- completed exonerate analysis