Command line: [exonerate -m p2g --showtargetgff -q SelJ/SelJ_U.fa -t SelJ/SUBSEQ/KB229027.1_0_subseq.txt --exhaustive yes]
Hostname: [luke]

C4 Alignment:
------------
         Query:  SelJ
        Target: KB229027.1:subseq(2216351,25116) Odobenus rosmarus divergens isolate Ivan unplaced genomic scaffold Scaffold150, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 243
   Query range: 0 -> 111
  Target range: 25116 -> 24743

     1 : AlaGlyLysAlaLeuGluHisAlaGlyValValGlyHisGlnProAlaAspLeuGlnAla :    20
         ||||||||||||||||||||||||||||||||||||.!.|||||||||||||||||||||
         AlaGlyLysAlaLeuGluHisAlaGlyValValGlyGluGlnProAlaAspLeuGlnAla
 25116 : GCGGGCAAAGCACTGGAACATGCCGGTGTCGTCGGGGAGCAGCCCGCTGATCTGCAGGCC : 25059

    21 : ProValAlaThrLeuProGluProValGlnProProHisLeuHisHisGlyArg  >>>> :    39
         ||||||.!!|||||||||||| !!!.!||||||! !||||||||||||||||||      
         ProValThrThrLeuProGluAlaAlaGlnProLeuHisLeuHisHisGlyArg++    
 25058 : CCCGTCACCACGCTGCCTGAAGCGGCTCAGCCTCTCCACCTCCACCACGGCCGCgt.... : 25000

    40 :  Target Intron 1 >>>>  ValGlyAspThrGlnAlaHisSerGlnProThrSerG :    51
               38 bp            ! !|||.!.|||  !|||||||||||||||!:!||| 
                              -+GlyGlyGlnThrTrpAlaHisSerGlnProSerSerT
 24999 : .....................tgGGGGGACAGACGTGGGCCCACAGTCAGCCCAGCTCCT : 24928

    52 : lyLeuProProSerCysLeuUnkGlyValProGlySerLeuHisGlyGluGlyValProV :    71
         !!!!!||||||||| !!!!!   !.!  !  !..!:::            |||||| !!|
         rpPheProProSerArgPhe***AlaTrpLysSerAlaArgGlyValTrpGlyValThrV
 24927 : GGTTCCCTCCCTCCCGCTTCTGAGCCTGGAAGTCGGcaaggggtgtgtggggggtCACAG : 24868

    72 : alCysProAlaProGlnSerLeuLeuArgGlyAlaAla-AsnGlyLeuGlyGlyGlyGlu :    90
         |||||! !!.!  ! !!!:!|||||||||||||||::!#|||||||||||| !!||||||
         alCysLeuGlyPhe***AsnLeuLeuArgGlyAlaSer#AsnGlyLeuGlyArgGlyGlu
 24867 : TGTGTCTTGGTTTCTAGAACCTTCTCAGAGGTGCCAGTTAATGGTCTTGGGAGAGGTGAA : 24810

    91 : GlyCysSerArgGlyGlyIleSerGlnValLeu-IleArgAlaGlyValProArgLysPh :   110
          !!||||||!:!  !||||||||| !!||||||#|||! !|||!.!||||||||||||||
         ArgCysSerGlnHisGlyIleSer***ValLeu#IleThrAlaAlaValProArgLysPh
 24809 : AGATGTTCTCAGCATGGCATTTCTTAAGTTCTTTATAACAGCAGCGGTTCCAAGAAAATT : 24749

   111 : eSer :   111
         ||||
         eSer
 24748 : TAGT : 24744

vulgar:  0 111 . KB229027.1:subseq(2216351,25116) 25116 24743 - 243 M 38 114 5 0 2 I 0 34 3 0 2 M 45 135 F 0 1 M 18 54 F 0 1 M 10 30
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2015-11-26
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
KB229027.1:subseq(2216351,25116)	exonerate:protein2genome:local	gene	24744	25116	243	-	.	gene_id 1 ; sequence  ; gene_orientation +
KB229027.1:subseq(2216351,25116)	exonerate:protein2genome:local	cds	25003	25116	.	-	.	
KB229027.1:subseq(2216351,25116)	exonerate:protein2genome:local	exon	25003	25116	.	-	.	insertions 0 ; deletions 0
KB229027.1:subseq(2216351,25116)	exonerate:protein2genome:local	splice5	25001	25002	.	-	.	intron_id 1 ; splice_site "GT"
KB229027.1:subseq(2216351,25116)	exonerate:protein2genome:local	intron	24965	25002	.	-	.	intron_id 1
KB229027.1:subseq(2216351,25116)	exonerate:protein2genome:local	splice3	24965	24966	.	-	.	intron_id 0 ; splice_site "TG"
KB229027.1:subseq(2216351,25116)	exonerate:protein2genome:local	cds	24744	24964	.	-	.	
KB229027.1:subseq(2216351,25116)	exonerate:protein2genome:local	exon	24744	24964	.	-	.	insertions 0 ; deletions 0 ; frameshifts 2
KB229027.1:subseq(2216351,25116)	exonerate:protein2genome:local	similarity	24744	25116	243	-	.	alignment_id 1 ; Query  ; Align 25117 1 114 ; Align 24965 39 135 ; Align 24829 84 54 ; Align 24774 102 30
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis