Command line: [exonerate -m p2g --showtargetgff -q SelI/SelI_U.fa -t SelI/SUBSEQ/KB228913.1_2_subseq.txt --exhaustive yes] Hostname: [luke] C4 Alignment: ------------ Query: SelI Target: KB228913.1:subseq(2542789,25110) Odobenus rosmarus divergens isolate Ivan unplaced genomic scaffold Scaffold36, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 992 Query range: 24 -> 236 Target range: 25110 -> 6530 25 : ValPheProThrTrpLeuAlaProAsnLeuIleThrPheSerGlyPheLeuLeuValVal : 44 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ValPheProThrTrpLeuAlaProAsnLeuIleThrPheSerGlyPheLeuLeuValVal 25110 : gtATTTCCTACTTGGCTGGCTCCAAATCTGATAACCTTCTCTGGCTTTCTGCTGGTTGTA : 25053 45 : PheAsnPheLeuLeuMetAlaTyrPheAspProAspPheTyrAlaSer{A} >>>> Ta : 61 ||||||||||||||||||||||||||||||||||||||||||||||||{|} PheAsnPheLeuLeuMetAlaTyrPheAspProAspPheTyrAlaSer{A}++ 25052 : TTCAATTTTCTACTTATGGCATACTTTGATCCTGACTTTTATGCTTCA{G}gt....... : 24999 62 : rget Intron 1 >>>> {la}ProGlyHisLysHisValProAspTrpValTrpIle : 73 1948 bp {||}||||||:!!||||||||||||||||||||||||||| ++{la}ProGlyTyrLysHisValProAspTrpValTrpIle 24998 : ..................ag{CA}CCAGGTTACAAGCATGTCCCTGATTGGGTTTGGATT : 23018 74 : ValValGlyIleLeuAsnPheIleAlaTyrThrLeu >>>> Target Intron 2 > : 86 |||||||||||||||||||||||||||||||||||| 5682 bp ValValGlyIleLeuAsnPheIleAlaTyrThrLeu+- 23017 : GTAGTGGGCATCCTCAACTTCATAGCCTACACTCTAgg...................... : 22977 87 : >>> ThrIleSerPheValTyrIleValThrAlaIleValGlyValGluAlaTrpTyrG : 104 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ++ThrIleSerPheValTyrIleValThrAlaIleValGlyValGluAlaTrpTyrG 22976 : ...agACTATATCTTTTGTCTACATAGTGACTGCGATTGTGGGAGTTGAGGCCTGGTATG : 17243 105 : luProPheLeuPheAsnPheLeuTyrArgAspLeuPheThrAlaMetIleIle{G} >> : 122 |||||||||||||||||||||||||||||||||||||||||||||||||||||{|} luProPheLeuPheAsnPheLeuTyrArgAspLeuPheThrAlaMetIleIle{G}++ 17242 : AACCTTTCCTGTTTAATTTCTTATATAGAGACCTATTCACTGCAATGATTATT{G}gt.. : 17186 123 : >> Target Intron 3 >>>> {ly}CysAlaLeuCysValThrLeuProMetSerL : 133 5248 bp {||}||||||||||||||||||||||||||||||| ++{ly}CysAlaLeuCysValThrLeuProMetSerL 17185 : .......................ag{GT}TGTGCGTTATGTGTGACTCTTCCAATGAGTT : 11908 134 : euLeuAsnPhePhe{Ar} >>>> Target Intron 4 >>>> {g}PheProAsnP : 142 ||||||||||||||{!!} 2603 bp {!} ||||||| euLeuAsnPhePhe{Se}++ --{r}ProProAsnP 11907 : TATTAAACTTTTTC{AG}gt.........................tt{c}ccccctaact : 9278 143 : heLysCysGlnLeuIleValCysGlnMetSerSerThrArgCysProThrLeuAsnTrpL : 162 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||! heLysCysGlnLeuIleValCysGlnMetSerSerThrArgCysProThrLeuAsnTrpP 9277 : tCAAGTGTCAGCTGATTGTTTGTCAAATGAGCAGCACCCGGTGCCCAACTTTGAATTGGT : 9218 163 : euLeuValProLeuPheLeuValValLeuValValAsnLeuGlyValAlaSerTyrValG : 182 !!||||||||||||||||||||||||||||||||||||||||||||| !!|||||||||| heLeuValProLeuPheLeuValValLeuValValAsnLeuGlyValProSerTyrValG 9217 : TCCTGGTTCCTCTTTTCTTGGTTGTCCTGGTGGTAAACTTAGGAGTACCCTCTTATGTTG : 9158 183 : luSerValLeuLeuTyrThrLeuThrAlaValPheThrLeuAlaHisIleHisTyrGlyV : 202 |||||:!!||||||:!!||||||||||||||||||||||||||||||||||||||||||| luSerIleLeuLeuHisThrLeuThrAlaValPheThrLeuAlaHisIleHisTyrGlyV 9157 : AGAGCATTCTCCTGCATACTTTAACAGCTGTTTTCACTCTGGCCCACATCCATTATGGAG : 9098 203 : alArgVal >>>> Target Intron 5 >>>> ValLysGlnLeuSerAsnHisPh : 212 ||!:!||| 2463 bp |||||||||||||||!:!||||| alGlnVal++ ++ValLysGlnLeuSerSerHisPh 9097 : TACAAGTGgt.........................agGTAAAGCAGCTGAGCAGCCATTT : 6605 213 : eGlnIleTyrProPheSerLeuArgLysProAsnSerAspUnkLeuGlyThrGluGluLy : 232 |||||||||||||||||||||||||||||||||||||||| |||||| |||||||| eGlnIleTyrProPheSerLeuArgLysProAsnSerAsp***LeuGlyMetGluGluLy 6604 : TCAGATTTATCCCTTCTCGTTGAGGAAACCAAACTCGGATTGACtaggaatggaagaaaa : 6545 233 : sSerIleGlyLeu : 236 |::: |||||| sAsnSerGlyLeu 6544 : gaatagtggCCTG : 6531 vulgar: 24 236 . KB228913.1:subseq(2542789,25110) 25110 6530 - 992 M 36 108 S 0 1 5 0 2 I 0 1944 3 0 2 S 1 2 M 24 72 5 0 2 I 0 5678 3 0 2 M 36 108 S 0 1 5 0 2 I 0 5244 3 0 2 S 1 2 M 15 45 S 0 2 5 0 2 I 0 2599 3 0 2 S 1 1 M 66 198 5 0 2 I 0 2459 3 0 2 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-11-26 ##type DNA # # # seqname source feature start end score strand frame attributes # KB228913.1:subseq(2542789,25110) exonerate:protein2genome:local gene 6531 25110 992 - . gene_id 1 ; sequence ; gene_orientation + KB228913.1:subseq(2542789,25110) exonerate:protein2genome:local cds 25002 25110 . - . KB228913.1:subseq(2542789,25110) exonerate:protein2genome:local exon 25002 25110 . - . insertions 0 ; deletions 0 KB228913.1:subseq(2542789,25110) exonerate:protein2genome:local splice5 25000 25001 . - . intron_id 1 ; splice_site "GT" KB228913.1:subseq(2542789,25110) exonerate:protein2genome:local intron 23054 25001 . - . intron_id 1 KB228913.1:subseq(2542789,25110) exonerate:protein2genome:local splice3 23054 23055 . - . intron_id 0 ; splice_site "AG" KB228913.1:subseq(2542789,25110) exonerate:protein2genome:local cds 22980 23053 . - . KB228913.1:subseq(2542789,25110) exonerate:protein2genome:local exon 22980 23053 . - . insertions 0 ; deletions 0 KB228913.1:subseq(2542789,25110) exonerate:protein2genome:local splice5 22978 22979 . - . intron_id 2 ; splice_site "GG" KB228913.1:subseq(2542789,25110) exonerate:protein2genome:local intron 17298 22979 . - . intron_id 2 KB228913.1:subseq(2542789,25110) exonerate:protein2genome:local splice3 17298 17299 . - . intron_id 1 ; splice_site "AG" KB228913.1:subseq(2542789,25110) exonerate:protein2genome:local cds 17189 17297 . - . KB228913.1:subseq(2542789,25110) exonerate:protein2genome:local exon 17189 17297 . - . insertions 0 ; deletions 0 KB228913.1:subseq(2542789,25110) exonerate:protein2genome:local splice5 17187 17188 . - . intron_id 3 ; splice_site "GT" KB228913.1:subseq(2542789,25110) exonerate:protein2genome:local intron 11941 17188 . - . intron_id 3 KB228913.1:subseq(2542789,25110) exonerate:protein2genome:local splice3 11941 11942 . - . intron_id 2 ; splice_site "ag" KB228913.1:subseq(2542789,25110) exonerate:protein2genome:local cds 11892 11940 . - . KB228913.1:subseq(2542789,25110) exonerate:protein2genome:local exon 11892 11940 . - . insertions 0 ; deletions 0 KB228913.1:subseq(2542789,25110) exonerate:protein2genome:local splice5 11890 11891 . - . intron_id 4 ; splice_site "GT" KB228913.1:subseq(2542789,25110) exonerate:protein2genome:local intron 9289 11891 . - . intron_id 4 KB228913.1:subseq(2542789,25110) exonerate:protein2genome:local splice3 9289 9290 . - . intron_id 3 ; splice_site "tt" KB228913.1:subseq(2542789,25110) exonerate:protein2genome:local cds 9090 9288 . - . KB228913.1:subseq(2542789,25110) exonerate:protein2genome:local exon 9090 9288 . - . insertions 0 ; deletions 0 KB228913.1:subseq(2542789,25110) exonerate:protein2genome:local splice5 9088 9089 . - . intron_id 5 ; splice_site "GT" KB228913.1:subseq(2542789,25110) exonerate:protein2genome:local intron 6627 9089 . - . intron_id 5 KB228913.1:subseq(2542789,25110) exonerate:protein2genome:local splice3 6627 6628 . - . intron_id 4 ; splice_site "AG" KB228913.1:subseq(2542789,25110) exonerate:protein2genome:local cds 6531 6626 . - . KB228913.1:subseq(2542789,25110) exonerate:protein2genome:local exon 6531 6626 . - . insertions 0 ; deletions 0 KB228913.1:subseq(2542789,25110) exonerate:protein2genome:local similarity 6531 25110 992 - . alignment_id 1 ; Query ; Align 25111 25 108 ; Align 23052 62 72 ; Align 17298 86 108 ; Align 11939 123 45 ; Align 9288 139 198 ; Align 6627 205 96 # --- END OF GFF DUMP --- # -- completed exonerate analysis