Command line: [exonerate -m p2g --showtargetgff -q SelH/SelH_U.fa -t SelH/SUBSEQ/KB229300.1_0_subseq.txt --exhaustive yes]
Hostname: [luke]

C4 Alignment:
------------
         Query:  SelH
        Target: KB229300.1:subseq(557475,50359) Odobenus rosmarus divergens isolate Ivan unplaced genomic scaffold Scaffold423, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 321
   Query range: 0 -> 76
  Target range: 49999 -> 50359

     1 : ThrSerUnkArgValTyrGlyArgAsnAlaAlaAlaLeuSerGlnAlaLeuArgLeuAsp :    20
         ||||||   ||||||||||||||||||||||||||||||||||||||||||||||||!!:
         ThrSer***ArgValTyrGlyArgAsnAlaAlaAlaLeuSerGlnAlaLeuArgLeuGlu
 50000 : ACGAGCTGACGCGTCTACGGGCGCAACGCCGCGGCCCTGAGCCAGGCGTTGCGCCTGGAG : 50057

    21 : ThrProGluLeuProValGluValAsnProAlaArgProArgArgGlySerPheGluVal :    40
         |||||||||||||||||||||||||||||||||!:!||||||||||||||||||||||||
         ThrProGluLeuProValGluValAsnProAlaLysProArgArgGlySerPheGluVal
 50058 : ACCCCGGAGCTTCCGGTGGAGGTGAATCCTGCCAAGCCCCGGAGGGGCAGCTTCGAGGTG : 50117

    41 : ThrLeuLeuArgProAspGlySer{T}  >>>> Target Intron 1 >>>>  {hr} :    49
         ||||||||||||||||||||||||{|}            132 bp           {||}
         ThrLeuLeuArgProAspGlySer{T}++                         --{hr}
 50118 : ACGCTGCTGCGCCCAGACGGCAGC{A}gt.........................ga{CT} : 50277

    50 : GlyIleLysLysGlyProProArgLysLeuLysPheProGluProGlnGluValValLys :    69
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         GlyIleLysLysGlyProProArgLysLeuLysPheProGluProGlnGluValValLys
 50278 : GGGATTAAGAAGGGGCCCCCACGCAAACTCAAGTTCCCTGAGCCTCAAGAGGTGGTGAAG : 50336

    70 : GluLeuLysLysTyrLeuSer :    76
         ||||||||||||:!!||||||
         GluLeuLysLysHisLeuSer
 50337 : GAGCTGAAGAAGCACCTTTCC : 50359

vulgar:  0 76 . KB229300.1:subseq(557475,50359) 49999 50359 + 321 M 48 144 S 0 1 5 0 2 I 0 128 3 0 2 S 1 2 M 27 81
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2015-11-27
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
KB229300.1:subseq(557475,50359)	exonerate:protein2genome:local	gene	50000	50359	321	+	.	gene_id 1 ; sequence  ; gene_orientation +
KB229300.1:subseq(557475,50359)	exonerate:protein2genome:local	cds	50000	50144	.	+	.	
KB229300.1:subseq(557475,50359)	exonerate:protein2genome:local	exon	50000	50144	.	+	.	insertions 0 ; deletions 0
KB229300.1:subseq(557475,50359)	exonerate:protein2genome:local	splice5	50145	50146	.	+	.	intron_id 1 ; splice_site "GT"
KB229300.1:subseq(557475,50359)	exonerate:protein2genome:local	intron	50145	50276	.	+	.	intron_id 1
KB229300.1:subseq(557475,50359)	exonerate:protein2genome:local	splice3	50275	50276	.	+	.	intron_id 0 ; splice_site "GA"
KB229300.1:subseq(557475,50359)	exonerate:protein2genome:local	cds	50277	50359	.	+	.	
KB229300.1:subseq(557475,50359)	exonerate:protein2genome:local	exon	50277	50359	.	+	.	insertions 0 ; deletions 0
KB229300.1:subseq(557475,50359)	exonerate:protein2genome:local	similarity	50000	50359	321	+	.	alignment_id 1 ; Query  ; Align 50000 1 144 ; Align 50279 50 81
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis