Command line: [exonerate -m p2g --showtargetgff -q Sel15/Sel15_U.fa -t Sel15/SUBSEQ/KB229690.1_0_subseq.txt --exhaustive yes]
Hostname: [luke]

C4 Alignment:
------------
         Query:  Sel15
        Target: KB229690.1:subseq(81363,50179) Odobenus rosmarus divergens isolate Ivan unplaced genomic scaffold Scaffold813, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 568
   Query range: 0 -> 123
  Target range: 49587 -> 50179

     1 : ValCysAlaLeuGlyAlaGluPheSerSerGluAlaCysArgGluLeuGlyPheSerSer :    20
         |||! !|||!!!|||.!!|||||||||||||||||||||||||||:!!||||||||||||
         ValSerAlaPheGlyThrGluPheSerSerGluAlaCysArgGluIleGlyPheSerSer
 49588 : GTGTCTGCATTTGGGACAGAGTTTTCATCAGAGGCTTGCAGAGAGATAGGCTTCTCCAGC : 49645

    21 : AsnLeuLeuCysSerSerCysAspLeuLeuGlyGlnPheAsnLeuLeuGlnLeuAspPro :    40
         |||! !||||||||||||||||||||||||||||||||||||||||||||||||||||||
         Asn***LeuCysSerSerCysAspLeuLeuGlyGlnPheAsnLeuLeuGlnLeuAspPro
 49646 : AACTAGCTCTGCAGCTCTTGTGACCTTCTTGGACAGTTTAACCTGCTTCAGCTCGATCCT : 49705

    41 : AspCysArgGlyCysCysGlnGluGluAlaGlnPheGluThrLysLysLeuTyrAlaGly :    60
         ||||||||||||||||||||||||||||||||||||||||||||||||:!!|||||||||
         AspCysArgGlyCysCysGlnGluGluAlaGlnPheGluThrLysLysValTyrAlaGly
 49706 : GACTGTAGAGGATGCTGTCAGGAAGAAGCACAGTTTGAAACAAAAAAGGTTTATGCAGGT : 49765

    61 : AlaIleLeuGluValCysGlyUnkLysLeuGly{Ar}  >>>> Target Intron 1  :    72
         |||||||||||||||||||||   |||||||||{||}            223 bp     
         AlaIleLeuGluValCysGly***LysLeuGly{Ar}++                     
 49766 : GCTATTCTTGAAGTTTGTGGATGAAAATTGGGG{ag}gt..................... : 49805

    73 : >>>>  {g}PheProGlnValGlnAlaPheValArgSerAspLysProLysLeuPheArg :    89
               {|}|||||||||||||||||||||||||||||||||||||||||||||||||||
             ++{g}PheProGlnValGlnAlaPheValArgSerAspLysProLysLeuPheArg
 49806 : ....ag{G}TTCCCTCAAGTCCAAGCTTTTGTCAGGAGTGATAAACCCAAACTATTCAGA : 50075

    90 : GlyLeuGlnIleLysTyrValArgGlySerAspProValLeuLysLeuLeuAspAspAsn :   109
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         GlyLeuGlnIleLysTyrValArgGlySerAspProValLeuLysLeuLeuAspAspAsn
 50076 : GGACTACAAATCAAGTATGTTCGTGGTTCAGATCCTGTATTAAAGCTTTTGGATGACAAC : 50135

   110 : GlyAsnIleAlaGluGluLeuSerIleLeuLysTrpAsnThr :   123
         ||||||||||||||||||||||||||||||||||||||||||
         GlyAsnIleAlaGluGluLeuSerIleLeuLysTrpAsnThr
 50136 : GGGAATATTGCTGAAGAATTAAGCATCCTCAAATGGAACACA : 50179

vulgar:  0 123 . KB229690.1:subseq(81363,50179) 49587 50179 + 568 M 71 213 S 0 2 5 0 2 I 0 219 3 0 2 S 1 1 M 51 153
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2015-11-27
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
KB229690.1:subseq(81363,50179)	exonerate:protein2genome:local	gene	49588	50179	568	+	.	gene_id 1 ; sequence  ; gene_orientation +
KB229690.1:subseq(81363,50179)	exonerate:protein2genome:local	cds	49588	49802	.	+	.	
KB229690.1:subseq(81363,50179)	exonerate:protein2genome:local	exon	49588	49802	.	+	.	insertions 0 ; deletions 0
KB229690.1:subseq(81363,50179)	exonerate:protein2genome:local	splice5	49803	49804	.	+	.	intron_id 1 ; splice_site "gt"
KB229690.1:subseq(81363,50179)	exonerate:protein2genome:local	intron	49803	50025	.	+	.	intron_id 1
KB229690.1:subseq(81363,50179)	exonerate:protein2genome:local	splice3	50024	50025	.	+	.	intron_id 0 ; splice_site "ag"
KB229690.1:subseq(81363,50179)	exonerate:protein2genome:local	cds	50026	50179	.	+	.	
KB229690.1:subseq(81363,50179)	exonerate:protein2genome:local	exon	50026	50179	.	+	.	insertions 0 ; deletions 0
KB229690.1:subseq(81363,50179)	exonerate:protein2genome:local	similarity	49588	50179	568	+	.	alignment_id 1 ; Query  ; Align 49588 1 213 ; Align 50027 73 153
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis