Command line: [exonerate -m p2g --showtargetgff -q SPSn/SPSn_U.fa -t SPSn/SUBSEQ/KB228942.1_0_subseq.txt --exhaustive yes]
Hostname: [luke]

C4 Alignment:
------------
         Query:  SPS
        Target: KB228942.1:subseq(3102657,25620) Odobenus rosmarus divergens isolate Ivan unplaced genomic scaffold Scaffold65, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 1090
   Query range: 1 -> 217
  Target range: 25620 -> 24972

     2 : ProAsnGluPheIleMetProAspSerAlaValValGlyAspValLeuValLeuThrLys :    21
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         ProAsnGluPheIleMetProAspSerAlaValValGlyAspValLeuValLeuThrLys
 25620 : CCAAATGAATTCATCATGCCCGACAGTGCAGTTGTTGGGGATGTGCTCGTGTTAACCAAA : 25563

    22 : ProLeuGlyThrGlnValAlaValAsnAlaHisGlnTrpLeuAspAsnProGluArgTrp :    41
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         ProLeuGlyThrGlnValAlaValAsnAlaHisGlnTrpLeuAspAsnProGluArgTrp
 25562 : CCCTTAGGAACCCAAGTTGCTGTCAATGCCCACCAATGGCTGGATAATCCGGAgagatgg : 25503

    42 : AsnLysIleAsnMetValValSerArgGluGluValGluLeuAlaTyrGlnGluAlaMet :    61
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         AsnLysIleAsnMetValValSerArgGluGluValGluLeuAlaTyrGlnGluAlaMet
 25502 : aataaaataaatatggtgGTCTCCAGAGAAGAAGTAGAGCTGGCTTATCAGGAAGCCATG : 25443

    62 : PheAsnMetAlaThrLeuAsnArgThrAlaAlaGlyLeuMetHisThrPheAsnAlaHis :    81
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         PheAsnMetAlaThrLeuAsnArgThrAlaAlaGlyLeuMetHisThrPheAsnAlaHis
 25442 : TTCAACATGGCTACCCTAAACAGAACTGCTGCTGGATTAATGCACACGTTTAATGCACAC : 25383

    82 : AlaAlaThrAspIleThrGlyPheGlyIleLeuGlyHisSerGlnAsnLeuAlaLysGln :   101
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         AlaAlaThrAspIleThrGlyPheGlyIleLeuGlyHisSerGlnAsnLeuAlaLysGln
 25382 : GCAGCCACGGATATCACAGGCTTTGGCATCCTAGGACACTCTCAGAACCTTGCAAAACAA : 25323

   102 : GlnArgAsnGluValSerPheValIleHisAsnLeuProIleIleAlaLysMetAlaAla :   121
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         GlnArgAsnGluValSerPheValIleHisAsnLeuProIleIleAlaLysMetAlaAla
 25322 : CAAAGAAACGAGGTGTCCTTTGTCATTCATAATCTGCCAATTATTGCCAAGATGGCTGCC : 25263

   122 : IleSerLysAlaSerGlyArgPheGlyLeuLeuGlnGlyThrSerAlaGluThrSerGly :   141
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         IleSerLysAlaSerGlyArgPheGlyLeuLeuGlnGlyThrSerAlaGluThrSerGly
 25262 : ATCAGCAAGGCCAGTGGGCGCTTTGGGCTCCTTCAAGGAACCTCAGCAGAAACTTCTGGG : 25203

   142 : GlyLeuLeuIleCysLeuProArgGluGlnAlaAlaArgPheCysSerGluIleLysSer :   161
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         GlyLeuLeuIleCysLeuProArgGluGlnAlaAlaArgPheCysSerGluIleLysSer
 25202 : GGATTACTGATTTGTCTGCCAAGAGAACAGGCAGCTCGCTTTTGTTCTGAAATCAAATCT : 25143

   162 : SerLysTyrGlyGluGlyHisGlnAlaTrpIleValGlyIleValGluLysGlyAsnArg :   181
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         SerLysTyrGlyGluGlyHisGlnAlaTrpIleValGlyIleValGluLysGlyAsnArg
 25142 : TCCAAGTATGGAGAGGGTCACCAAGCATGGATCGTCGGTATTGTGGAAAAGGGAAACCGG : 25083

   182 : ThrAlaArgIleIleAspLysProArgValIleGluValLeuProArgGlyAlaThrAla :   201
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         ThrAlaArgIleIleAspLysProArgValIleGluValLeuProArgGlyAlaThrAla
 25082 : ACAGCCCGGATCATTGACAAGCCTCGAGTTATTGAGGTCCTACCTCGTGGGGCCACTGCT : 25023

   202 : ThrAlaLeuValProAspAsnSerAsnAlaAlaSerGluProSerSer :   217
         |||||||||!.!||||||||||||!:!|||:!!|||||||||||||||
         ThrAlaLeuAlaProAspAsnSerSerAlaSerSerGluProSerSer
 25022 : ACTGCTCTTGCTCCTGACAATTCCAGTGCCTCCTCTGAGCCTAGTTCG : 24973

vulgar:  1 217 . KB228942.1:subseq(3102657,25620) 25620 24972 - 1090 M 216 648
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2015-11-26
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
KB228942.1:subseq(3102657,25620)	exonerate:protein2genome:local	gene	24973	25620	1090	-	.	gene_id 1 ; sequence  ; gene_orientation .
KB228942.1:subseq(3102657,25620)	exonerate:protein2genome:local	cds	24973	25620	.	-	.	
KB228942.1:subseq(3102657,25620)	exonerate:protein2genome:local	exon	24973	25620	.	-	.	insertions 0 ; deletions 0
KB228942.1:subseq(3102657,25620)	exonerate:protein2genome:local	similarity	24973	25620	1090	-	.	alignment_id 1 ; Query  ; Align 25621 2 648
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis