Command line: [exonerate -m p2g --showtargetgff -q SECp43n/SECp43n_U.fa -t SECp43n/SUBSEQ/KB228911.1_9_subseq.txt --exhaustive yes]
Hostname: [luke]

C4 Alignment:
------------
         Query:  SECp43
        Target: KB228911.1:subseq(1067436,25128) Odobenus rosmarus divergens isolate Ivan unplaced genomic scaffold Scaffold34, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 760
   Query range: 87 -> 251
  Target range: 25128 -> 15018

    88 : AlaPheValSerTyrArgGlyTyrGlyPheValLysPheThrAspGluLeuGluGlnLys :   107
         |||||||||! !  !|||||||||||||||||||||||||||||||||||||||||||||
         AlaPheValPheArgArgGlyTyrGlyPheValLysPheThrAspGluLeuGluGlnLys
 25128 : GCTTTTGTTTTCCGCAGGGGCTATGGTTTTGTGAAATTCACAGATGAGCTGGAACAGAAG : 25071

   108 : ArgAlaLeuThrGluCysGlnGlyAlaValGlyLeuGlySerLysPro  >>>> Targe :   124
         ||||||||||||||||||||||||||||||||||||||||||||||||           3
         ArgAlaLeuThrGluCysGlnGlyAlaValGlyLeuGlySerLysPro++          
 25070 : CGAGCTCTGACCGAGTGCCAGGGAGCAGTCGGCCTGGGGTCTAAACCAgt.......... : 25018

   125 : t Intron 1 >>>>  LeuTrpLysArgLeuSerThrPheValSerPheCysPhePheL :   138
         267 bp             !|||||| !!|||      ||||||   |||   |||||||
                        --AlaTrpLysCysLeuProIlePheValTyrPheGlyPhePheL
 25017 : ...............gtGCTTGGAAATGTTTGcctatatttgtttattttggcttCTTTC : 21711

   139 : euHisLeuArgSerArgValLysProValGluTyrSerGlnMetTyrSerTyrSerTyrA :   158
         ||!.!|||||||||||||||||||||||||||||||||||||||||||||||||||||||
         euArgLeuArgSerArgValLysProValGluTyrSerGlnMetTyrSerTyrSerTyrA
 21710 : TTCGTCTAAGGAGCCGTGTGAAGCCAGTAGAGTATAGTCAGATGTACAGTTACAGCTACA : 21651

   159 : snGlnTyrTyrGlnGlnTyrGlnAsnTyrTyrAlaGlnTrpGlyTyrAspGlnAsnThrG :   178
         |||||||||||||||||||||||!.!||||||||||||||||||||||||||||||||||
         snGlnTyrTyrGlnGlnTyrGlnThrTyrTyrAlaGlnTrpGlyTyrAspGlnAsnThrG
 21650 : ACCAGTATTACCAGCAGTACCAGACCTACTACGCCCAGTGGGGCTACGACCAGAACACGG : 21591

   179 : lySerTyrSerTyrSerTyrProGlnTyrGlyTyrThrGlnSerThrMetGln  >>>>  :   196
         ||||||||||||||||||||||||||||||||||||||||||||.!!||||||       
         lySerTyrSerTyrSerTyrProGlnTyrGlyTyrThrGlnSerAlaMetGln++     
 21590 : GCAGCTACAGCTACAGCTACCCCCAGTACGGCTACACGCAGAGCGCCATGCAGgt..... : 21535

   197 : Target Intron 2 >>>>  ThrTyrGluGluValGlyAspAspAlaLeuGlu{A}   :   207
              251 bp           |||||||||||||||||||||||||||||||||{|}  
                             ++ThrTyrGluGluValGlyAspAspAlaLeuGlu{A}++
 21534 : ....................agACATATGAAGAAGTCGGGGATGACGCATTGGAA{G}gt : 21252

   208 : >>>> Target Intron 3 >>>>  {sp}ProMetProGlnLeuAspValThrGluAl :   217
                  6100 bp           {||}|||||||||||||||||||||||||||||
                                  ++{sp}ProMetProGlnLeuAspValThrGluAl
 21251 : .........................ag{AC}CCCATGCCGCAGTTGGATGTGACGGAGGC : 15123

   218 : aAsnLysGluPheMetGluGlnSerGluGluLeuTyrAspAlaLeuMetAspCysHisTr :   237
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         aAsnLysGluPheMetGluGlnSerGluGluLeuTyrAspAlaLeuMetAspCysHisTr
 15122 : CAACAAGGAGTTCATGGAGCAGAGTGAGGAGCTGTATGATGCCTTGATGGACTGTCACTG : 15063

   238 : pGlnProLeuAspThrValSerSerGluIleProAlaMetMet :   251
         |||||||||||||||||||||||||||||||||||||||||||
         pGlnProLeuAspThrValSerSerGluIleProAlaMetMet
 15062 : GCAGCCCCTGGACACAGTATCTTCAGAGATACCCGCCATGATG : 15019

vulgar:  87 251 . KB228911.1:subseq(1067436,25128) 25128 15018 - 760 M 36 108 5 0 2 I 0 3263 3 0 2 M 72 216 5 0 2 I 0 247 3 0 2 M 11 33 S 0 1 5 0 2 I 0 6096 3 0 2 S 1 2 M 44 132
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2015-11-26
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
KB228911.1:subseq(1067436,25128)	exonerate:protein2genome:local	gene	15019	25128	760	-	.	gene_id 1 ; sequence  ; gene_orientation +
KB228911.1:subseq(1067436,25128)	exonerate:protein2genome:local	cds	25021	25128	.	-	.	
KB228911.1:subseq(1067436,25128)	exonerate:protein2genome:local	exon	25021	25128	.	-	.	insertions 0 ; deletions 0
KB228911.1:subseq(1067436,25128)	exonerate:protein2genome:local	splice5	25019	25020	.	-	.	intron_id 1 ; splice_site "GT"
KB228911.1:subseq(1067436,25128)	exonerate:protein2genome:local	intron	21754	25020	.	-	.	intron_id 1
KB228911.1:subseq(1067436,25128)	exonerate:protein2genome:local	splice3	21754	21755	.	-	.	intron_id 0 ; splice_site "GT"
KB228911.1:subseq(1067436,25128)	exonerate:protein2genome:local	cds	21538	21753	.	-	.	
KB228911.1:subseq(1067436,25128)	exonerate:protein2genome:local	exon	21538	21753	.	-	.	insertions 0 ; deletions 0
KB228911.1:subseq(1067436,25128)	exonerate:protein2genome:local	splice5	21536	21537	.	-	.	intron_id 2 ; splice_site "GT"
KB228911.1:subseq(1067436,25128)	exonerate:protein2genome:local	intron	21287	21537	.	-	.	intron_id 2
KB228911.1:subseq(1067436,25128)	exonerate:protein2genome:local	splice3	21287	21288	.	-	.	intron_id 1 ; splice_site "AG"
KB228911.1:subseq(1067436,25128)	exonerate:protein2genome:local	cds	21253	21286	.	-	.	
KB228911.1:subseq(1067436,25128)	exonerate:protein2genome:local	exon	21253	21286	.	-	.	insertions 0 ; deletions 0
KB228911.1:subseq(1067436,25128)	exonerate:protein2genome:local	splice5	21251	21252	.	-	.	intron_id 3 ; splice_site "GT"
KB228911.1:subseq(1067436,25128)	exonerate:protein2genome:local	intron	15153	21252	.	-	.	intron_id 3
KB228911.1:subseq(1067436,25128)	exonerate:protein2genome:local	splice3	15153	15154	.	-	.	intron_id 2 ; splice_site "AG"
KB228911.1:subseq(1067436,25128)	exonerate:protein2genome:local	cds	15019	15152	.	-	.	
KB228911.1:subseq(1067436,25128)	exonerate:protein2genome:local	exon	15019	15152	.	-	.	insertions 0 ; deletions 0
KB228911.1:subseq(1067436,25128)	exonerate:protein2genome:local	similarity	15019	25128	760	-	.	alignment_id 1 ; Query  ; Align 25129 88 108 ; Align 21754 124 216 ; Align 21287 196 33 ; Align 15151 208 132
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis