Command line: [exonerate -m p2g --showtargetgff -q SBP2n/SBP2n_U.fa -t SBP2n/SUBSEQ/KB228932.1_3_subseq.txt --exhaustive yes] Hostname: [luke] C4 Alignment: ------------ Query: SBP2 Target: KB228932.1:subseq(1456254,25206) Odobenus rosmarus divergens isolate Ivan unplaced genomic scaffold Scaffold55, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 797 Query range: 380 -> 611 Target range: 25206 -> 16805 381 : SerLeuPheAsnLysLeuValGluLeuThrGluGluAlaArgLysAlaTyrLysAspMet : 400 ||||||||||||:!!|||||||||||||||||||||||||||||||||||||||!!:||| SerLeuPheAsnGlnLeuValGluLeuThrGluGluAlaArgLysAlaTyrLysGluMet 25206 : AGCCTGTTTAATCAGTTGGTAGAGCTCACTGAGGAAGCCAGGAAAGCATATAAAGAGATG : 25149 401 : ValAlaAlaMetGluGlnGluGlnAlaGluGluAlaLeuLysAsnValLysLysValPro : 420 ||||||||||||||||||||||||||||||||||||||||||||||||||||||!.!||| ValAlaAlaMetGluGlnGluGlnAlaGluGluAlaLeuLysAsnValLysLysAlaPro 25148 : GTTGCGGCAATGGAACAAGAGCAGGCGGAGGAAGCCTTGAAGAACGTGAAAAAGGCGCCA : 25089 421 : HisHisMetGlyHisSerArgAsnProSerAlaAlaSerAlaIleSerPheCysSerVal : 440 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| HisHisMetGlyHisSerArgAsnProSerAlaAlaSerAlaIleSerPheCysSerVal 25088 : CATCACATGGGGCACTCTCGGAACCCCTCTGCAGCAAGCGCCATTTCTTTCTGCAGTGTC : 25029 441 : IleSerGluProIleSerGluValAsnGluLysGluTyr{G} >>>> Target Intr : 454 |||||||||||||||||||||||||||||||||||||||{|} 3082 bp IleSerGluProIleSerGluValAsnGluLysGluTyr{G}++ 25028 : ATTTCTGAACCCATTTCTGAAGTAAATGAAAAGGAATAT{G}gt................ : 24984 455 : on 1 >>>> {lu}MetSer{G} >>>> Target Intron 2 >>>> {ly}Ser : 458 {||}......{|} 1808 bp {||}! ! +-{lu}PheLys{G}+- ++{ly}Met 24983 : .........at{ag}tttaaa{g}ga.........................ag{GA}ATG : 20085 459 : GlyLysGluLysGlyGlyGlyAlaAlaGlnGlnLysGlnAsnLysCysPheGlyThrVal : 478 !! ...::: |||||||||||||||! !||||||||||||||| !!|||:!! ArgIleArgArgGluGluGlyAlaAlaGlnGlnThrGlnAsnLysCysPhe***ThrIle 20084 : AGGataaggagggaagaaggggcagCACAGCAAACACAAAACAAGTGCTTTTGAACTATA : 20025 479 : CysLysLysPheCysGlyAsnLeuGluValMetThrLeuGly{G} >>>> Target I : 493 ! ! ||| !..! !...:!!.!.|||! ! !..!{!} 149 TyrAlaLysSerAlaMetGlyIleHisValSerGlyLysSer{A}+- 20024 : TATGCCAAAAGTGCTATGGGAATTCATGTGAGTGGAAAGTCA{G}ga............. : 19977 494 : ntron 3 >>>> {ly}MetArgIleGlnArgAspProLysHisArgMetHisAspGln : 507 bp {.!}||||||||||||! !|||||||||||||||:!!|||! ! ! ++{la}MetArgIleGlnThrAspProLysHisArgValHisGlyTrp 19976 : ............ag{CA}ATGAGAATTCAGACTGACCCCAAGCATAGAGTGCATGGCTGG : 19789 508 : GlyLeuTyr >>>> Target Intron 4 >>>> GluTrpAsnGlnLysAspSerT : 518 ! ||| 2666 bp |||||| !...:!!.!.|||| ArgLeu***-+ -+GluTrpAlaSerGlnGlnSerT 19788 : AGgttgtaaat.........................tgGAATGGGCTTCCCAGCAGAGTA : 17090 519 : hrGluThrGlySerLeuAspGlySerAla<->GluSerLeuAsnSerSerIleThrSerT : 537 ||||||||||||||||||||||||||..! !!: !|||||||||||||||||||||| hrGluThrGlySerLeuAspGlySerCysArgAspLeuLeuAsnSerSerIleThrSerT 17089 : CAGAGACTGGTTCTTTGGATGGCAGTTGCCGAGATCTCTTGAATTCCTccatcaccagca : 17030 538 : hrThrSerThrLeuValProGlyMetLeuGluGluGluAspAspGluGluGluGluGluG : 557 |||||||||||||||||||||||||||||||||||||||||||||||:::|||||||||| hrThrSerThrLeuValProGlyMetLeuGluGluGluAspAspGluAspGluGluGluG 17029 : ccaccagcactCTTGTCCCTGGCATGCTCGAAGAAGAGGATGAtgaagatgaggaagagg : 16970 558 : luGluAspTyrThrHisGluProIleSerValGluValGlnLeuAsnSerArgIleGluS : 577 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| luGluAspTyrThrHisGluProIleSerValGluValGlnLeuAsnSerArgIleGluS 16969 : aggaagattaTACTCATGAACCCATATCTGTAGAAGTACAGCTCAATAGTAGAATTGAGT : 16910 578 : erTrpValSerGluThrGlnArgThrMetGluThrLeuGlnLeuGlyLysThrLeuAsnG : 597 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| erTrpValSerGluThrGlnArgThrMetGluThrLeuGlnLeuGlyLysThrLeuAsnG 16909 : CGTGGGTCTCTGAGACCCAGAGAACAATGGAGACTCTTCAGCTTGGAAAAACCCTTAATG : 16850 598 : lySerGluGluAspAsnAlaGluGlnSerGlyGluGluGluAla : 611 ||||||||||||||:!!||||||||||||||||||||||||||| lySerGluGluAspHisAlaGluGlnSerGlyGluGluGluAla 16849 : GTTCTGAGGAAGACCATGCAGAGCAGAGTGGAGAAGAGGAGGCA : 16806 vulgar: 380 611 . KB228932.1:subseq(1456254,25206) 25206 16805 - 797 M 73 219 S 0 1 5 0 2 I 0 3078 3 0 2 S 1 2 M 2 6 S 0 1 5 0 2 I 0 1804 3 0 2 S 1 2 M 35 105 S 0 1 5 0 2 I 0 145 3 0 2 S 1 2 M 17 51 5 0 2 I 0 2662 3 0 2 M 17 51 G 0 3 M 84 252 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-11-26 ##type DNA # # # seqname source feature start end score strand frame attributes # KB228932.1:subseq(1456254,25206) exonerate:protein2genome:local gene 16806 25206 797 - . gene_id 1 ; sequence ; gene_orientation + KB228932.1:subseq(1456254,25206) exonerate:protein2genome:local cds 24987 25206 . - . KB228932.1:subseq(1456254,25206) exonerate:protein2genome:local exon 24987 25206 . - . insertions 0 ; deletions 0 KB228932.1:subseq(1456254,25206) exonerate:protein2genome:local splice5 24985 24986 . - . intron_id 1 ; splice_site "GT" KB228932.1:subseq(1456254,25206) exonerate:protein2genome:local intron 21905 24986 . - . intron_id 1 KB228932.1:subseq(1456254,25206) exonerate:protein2genome:local splice3 21905 21906 . - . intron_id 0 ; splice_site "at" KB228932.1:subseq(1456254,25206) exonerate:protein2genome:local cds 21896 21904 . - . KB228932.1:subseq(1456254,25206) exonerate:protein2genome:local exon 21896 21904 . - . insertions 0 ; deletions 0 KB228932.1:subseq(1456254,25206) exonerate:protein2genome:local splice5 21894 21895 . - . intron_id 2 ; splice_site "ga" KB228932.1:subseq(1456254,25206) exonerate:protein2genome:local intron 20088 21895 . - . intron_id 2 KB228932.1:subseq(1456254,25206) exonerate:protein2genome:local splice3 20088 20089 . - . intron_id 1 ; splice_site "AG" KB228932.1:subseq(1456254,25206) exonerate:protein2genome:local cds 19980 20087 . - . KB228932.1:subseq(1456254,25206) exonerate:protein2genome:local exon 19980 20087 . - . insertions 0 ; deletions 0 KB228932.1:subseq(1456254,25206) exonerate:protein2genome:local splice5 19978 19979 . - . intron_id 3 ; splice_site "GA" KB228932.1:subseq(1456254,25206) exonerate:protein2genome:local intron 19831 19979 . - . intron_id 3 KB228932.1:subseq(1456254,25206) exonerate:protein2genome:local splice3 19831 19832 . - . intron_id 2 ; splice_site "AG" KB228932.1:subseq(1456254,25206) exonerate:protein2genome:local cds 19778 19830 . - . KB228932.1:subseq(1456254,25206) exonerate:protein2genome:local exon 19778 19830 . - . insertions 0 ; deletions 0 KB228932.1:subseq(1456254,25206) exonerate:protein2genome:local splice5 19776 19777 . - . intron_id 4 ; splice_site "at" KB228932.1:subseq(1456254,25206) exonerate:protein2genome:local intron 17112 19777 . - . intron_id 4 KB228932.1:subseq(1456254,25206) exonerate:protein2genome:local splice3 17112 17113 . - . intron_id 3 ; splice_site "TG" KB228932.1:subseq(1456254,25206) exonerate:protein2genome:local cds 16806 17111 . - . KB228932.1:subseq(1456254,25206) exonerate:protein2genome:local exon 16806 17111 . - . insertions 3 ; deletions 0 KB228932.1:subseq(1456254,25206) exonerate:protein2genome:local similarity 16806 25206 797 - . alignment_id 1 ; Query ; Align 25207 381 219 ; Align 21903 455 6 ; Align 20086 458 105 ; Align 19829 494 51 ; Align 17112 511 51 ; Align 17058 528 252 # --- END OF GFF DUMP --- # -- completed exonerate analysis