Command line: [exonerate -m p2g --showtargetgff -q GPx6n/GPx6n_U.fa -t GPx6n/SUBSEQ/KB229423.1_4_subseq.txt --exhaustive yes] Hostname: [luke] C4 Alignment: ------------ Query: GPx6 Target: KB229423.1:subseq(775371,25119) Odobenus rosmarus divergens isolate Ivan unplaced genomic scaffold Scaffold546, whole genome shotgun sequence Model: protein2genome:local Raw score: 645 Query range: 0 -> 155 Target range: 16603 -> 25119 1 : MetAlaProProLeuTrpAlaSerCysLeuPheProLeuPheLeuGlyGlyLeuAlaGln : 20 ||| !! !! !||||||||||||!! ||||||||||||||||||!.!|||||||||||| MetLeuGlnGlnLeuTrpAlaSerTrpLeuPheProLeuPheLeuAlaGlyLeuAlaGln 16604 : ATGCTCCAGCAGCTCTGGGCGTCGTGGCTTTTCCCACTGTTCCTGGCCGGCCTCGCCCAG : 16661 21 : ProAlaProLysProGln >>>> Target Intron 1 >>>> ThrMetArg >> : 30 |||.!!! !||| !:!! 3018 bp !.!.!...! ProThrGlnLysMetLys++ ++AsnPheGlu++ 16662 : CCGACCCAGAAGATGAAGgt.........................agAATTTCGAGgt.. : 19711 31 : >> Target Intron 2 >>>> MetAspCysTyrThrGlyValThrGlyThrIleTy : 41 101 bp ||||||||||||! !|||||||||||||||||||| ++MetAspCysTyrLysGlyValThrGlyThrIleTy 19712 : .......................agATGGATTGCTACAAGGGGGTGACGGGCACCATCTA : 19843 42 : rGluTyrGlyAlaLeuThrLeuSerAspGlyAspTyrIleGlnPheLysGlnTyrAlaGl : 61 ||||||||||||||||!:!|||!:!!!:! !!!::!!|||! !||||||!:!|||||||| rGluTyrGlyAlaLeuSerLeuAsnGluGluGluHisIleProPheLysArgTyrAlaGl 19844 : TGAGTATGGAGCCCTCAGCCTCAATGAAGAGGAGCACATTCCGTTCAAGCGGTACGCGGG : 19903 62 : yLysValValLeuPheValAsnValAlaSerTyrCysGlyLeuThrAlaGlnTyrPro{G : 81 |||| !|||||||||||||||||||||!!!|||||||||||||||||||||||||||{| yLysHisValLeuPheValAsnValAlaThrTyrCysGlyLeuThrAlaGlnTyrPro{G 19904 : CAAGCACGTCCTCTTTGTCAACGTGGCTACCTACTGTGGCCTGACAGCTCAGTACCCC{G : 19963 82 : } >>>> Target Intron 3 >>>> {lu}LeuAsnAlaLeuGlnAspGluLeuLy : 90 } 4456 bp {||}|||||||||||||||||||||||||| }++ ++{lu}LeuAsnAlaLeuGlnAspGluLeuLy 19964 : }gt.........................ag{AA}CTGAATGCACTGCAGGACGAGCTGAA : 24446 91 : sArgTyrGlyValValValLeuGlyPheProCysAsnGlnPheGlyLysGlnGluProGl : 110 |! !! !||||||||||||||||||||||||||||||||||||||||||||||||||||| sProSerGlyValValValLeuGlyPheProCysAsnGlnPheGlyLysGlnGluProGl 24447 : GCCTTCTGGTGTCGTCGTGCTGGGCTTTCCCTGCAACCAGTTTGGAAAACAAGAACCAGG : 24506 111 : yLysAsnSerGluIleLeuSerGlyLeu{Ly} >>>> Target Intron 4 >>>> : 120 ||||||||||||||||||||||||||||{||} 476 bp yLysAsnSerGluIleLeuSerGlyLeu{Ly}++ + 24507 : AAAGAACTCAGAGATCCTTTCTGGGCTC{AA}gt.........................a : 25012 121 : {s}TyrValArgProGlyGlyGlyPheValProSerPheGlnLeuPheGluLysGlyAs : 139 {|}||||||||||||||||||||||||||||||!:!||||||||||||||||||||||| +{s}TyrValArgProGlyGlyGlyPheValProAsnPheGlnLeuPheGluLysGlyAs 25013 : g{G}TATGTGCGTCCGGGTGGTGGCTTTGTCCCCAATTTTCAGCTCTTTGAGAAAGGGGA : 25069 140 : pValAsnGlyGluAsnGluGlnLysValPheThrPheLeuLysValSer : 155 |||||||||||||...||||||||||||||||||||||||||||||||| pValAsnGlyGluLysGluGlnLysValPheThrPheLeuLysValSer 25070 : TGtgaatggagaaaaagaacagaaggtCTTTACCTTCCTGAAGGTGAGT : 25119 vulgar: 0 155 . KB229423.1:subseq(775371,25119) 16603 25119 + 645 M 26 78 5 0 2 I 0 3014 3 0 2 M 3 9 5 0 2 I 0 97 3 0 2 M 51 153 S 0 1 5 0 2 I 0 4452 3 0 2 S 1 2 M 38 114 S 0 2 5 0 2 I 0 472 3 0 2 S 1 1 M 35 105 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-11-26 ##type DNA # # # seqname source feature start end score strand frame attributes # KB229423.1:subseq(775371,25119) exonerate:protein2genome:local gene 16604 25119 645 + . gene_id 1 ; sequence ; gene_orientation + KB229423.1:subseq(775371,25119) exonerate:protein2genome:local cds 16604 16681 . + . KB229423.1:subseq(775371,25119) exonerate:protein2genome:local exon 16604 16681 . + . insertions 0 ; deletions 0 KB229423.1:subseq(775371,25119) exonerate:protein2genome:local splice5 16682 16683 . + . intron_id 1 ; splice_site "GT" KB229423.1:subseq(775371,25119) exonerate:protein2genome:local intron 16682 19699 . + . intron_id 1 KB229423.1:subseq(775371,25119) exonerate:protein2genome:local splice3 19698 19699 . + . intron_id 0 ; splice_site "AG" KB229423.1:subseq(775371,25119) exonerate:protein2genome:local cds 19700 19708 . + . KB229423.1:subseq(775371,25119) exonerate:protein2genome:local exon 19700 19708 . + . insertions 0 ; deletions 0 KB229423.1:subseq(775371,25119) exonerate:protein2genome:local splice5 19709 19710 . + . intron_id 2 ; splice_site "GT" KB229423.1:subseq(775371,25119) exonerate:protein2genome:local intron 19709 19809 . + . intron_id 2 KB229423.1:subseq(775371,25119) exonerate:protein2genome:local splice3 19808 19809 . + . intron_id 1 ; splice_site "AG" KB229423.1:subseq(775371,25119) exonerate:protein2genome:local cds 19810 19963 . + . KB229423.1:subseq(775371,25119) exonerate:protein2genome:local exon 19810 19963 . + . insertions 0 ; deletions 0 KB229423.1:subseq(775371,25119) exonerate:protein2genome:local splice5 19964 19965 . + . intron_id 3 ; splice_site "GT" KB229423.1:subseq(775371,25119) exonerate:protein2genome:local intron 19964 24419 . + . intron_id 3 KB229423.1:subseq(775371,25119) exonerate:protein2genome:local splice3 24418 24419 . + . intron_id 2 ; splice_site "AG" KB229423.1:subseq(775371,25119) exonerate:protein2genome:local cds 24420 24537 . + . KB229423.1:subseq(775371,25119) exonerate:protein2genome:local exon 24420 24537 . + . insertions 0 ; deletions 0 KB229423.1:subseq(775371,25119) exonerate:protein2genome:local splice5 24538 24539 . + . intron_id 4 ; splice_site "GT" KB229423.1:subseq(775371,25119) exonerate:protein2genome:local intron 24538 25013 . + . intron_id 4 KB229423.1:subseq(775371,25119) exonerate:protein2genome:local splice3 25012 25013 . + . intron_id 3 ; splice_site "AG" KB229423.1:subseq(775371,25119) exonerate:protein2genome:local cds 25014 25119 . + . KB229423.1:subseq(775371,25119) exonerate:protein2genome:local exon 25014 25119 . + . insertions 0 ; deletions 0 KB229423.1:subseq(775371,25119) exonerate:protein2genome:local similarity 16604 25119 645 + . alignment_id 1 ; Query ; Align 16604 1 78 ; Align 19700 27 9 ; Align 19810 30 153 ; Align 24422 82 114 ; Align 25015 121 105 # --- END OF GFF DUMP --- # -- completed exonerate analysis