Command line: [exonerate -m p2g --showtargetgff -q GPx4/GPx4_U.fa -t GPx4/SUBSEQ/KB228918.1_1_subseq.txt --exhaustive yes]
Hostname: [luke]

C4 Alignment:
------------
         Query:  GPx4
        Target: KB228918.1:subseq(4487468,25074) Odobenus rosmarus divergens isolate Ivan unplaced genomic scaffold Scaffold41, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 632
   Query range: 0 -> 149
  Target range: 25074 -> 24357

     1 : ArgCysAlaGlnSerMetHisGluPheSerAlaLysAspIleAspGlyHisMetValAsn :    20
         ||||||||||||||||||||||||||||||||||||||||||||||||!.!|||||||||
         ArgCysAlaGlnSerMetHisGluPheSerAlaLysAspIleAspGlyArgMetValAsn
 25074 : CGCTGTGCTCAGTCTATGCACGAGTTCTCCGCCAAGGACATCGATGGACGCATGGTTAAC : 25017

    21 : LeuAspLysTyr{Ar}  >>>> Target Intron 1 >>>>  {g}GlyPheValCys :    29
         ||||||||||||{||}            83 bp            {|}||||||||||||
         LeuAspLysTyr{Ar}++                         ++{g}GlyPheValCys
 25016 : CTGGACAAGTAC{CG}gt.........................ag{G}GGCTTCGTGTGC : 24907

    30 : IleValThrAsnValAlaSerGlnUnkGlyLysThrGluValAsnTyrThrGlnLeuVal :    49
         ||||||||||||||||||||||||   |||||||||!!:|||||||||||||||||||||
         IleValThrAsnValAlaSerGln***GlyLysThrAspValAsnTyrThrGlnLeuVal
 24906 : ATCGTCACCAACGTGGCCTCGCAGTGAGGCAAAACAGACGTAAACTATACTCAGCTTGTC : 24847

    50 : AspLeuHisAlaArgTyrAlaGluCysGlyLeuArgIleLeuAlaPheProCysAsnGln :    69
         |||||||||||||||||||||||| !!|||||||||||||||||||||||||||||||||
         AspLeuHisAlaArgTyrAlaGluGlyGlyLeuArgIleLeuAlaPheProCysAsnGln
 24846 : GACCTGCACGCCCGATACGCTGAGGGTGGTTTACGGATCCTGGCCTTCCCTTGCAACCAG : 24787

    70 : PheGlyArgGln  >>>> Target Intron 2 >>>>  CysProCysLeuProGlnG :    80
         ||||||||||||            84 bp               ||||||||||||||||
         PheGlyArgGln++                         --HisProCysLeuProGlnG
 24786 : TTCGGGAGGCAGgt.........................cacacccctgcttgcCACAGG : 24670

    81 : luProGlySerAsnAlaGluIleLysGluPheAlaAlaGlyTyrAsnValLysPheAspM :   100
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         luProGlySerAsnAlaGluIleLysGluPheAlaAlaGlyTyrAsnValLysPheAspM
 24669 : AGCCAGGGAGCAATGCGGAGATCAAAGAGTTCGCTGCTGGCTATAATGTCAAATTCGATA : 24610

   101 : etPheSerLysIleCysValAsnGlyAspAspAlaHisProLeuTrpLysTrpMetLysG :   120
         ||!:!||||||||||||||||||||||||||||||||||||||||||||||||||||||!
         etTyrSerLysIleCysValAsnGlyAspAspAlaHisProLeuTrpLysTrpMetLysV
 24609 : TGTACAGCAAGATCTGTGTGAATGGGGACGATGCTCACCCGCTGTGGAAGTGGATGAAAG : 24550

   121 : lyProArgGly  >>>> Target Intron 3 >>>>  ValArgAsnArgHisArgPh :   130
          !! !! !  !            103 bp              |||  ! !!||||||||
         alGlnProLys+-                         ++AspArgLeuCysHisArgPh
 24549 : TCCAGCCCAAGgg.........................aggatCGCCTTTGCCACCGATT : 24417

   131 : eLeuMetIleSerHisLeuSerSerSerAlaIleLysTrpAsnPheThrLysValArg :   149
         |||||||! !||||||! !! !!!!|||||||||||||||||||||||||||||||||
         eLeuMetThrSerHisCysPheCysSerAlaIleLysTrpAsnPheThrLysValArg
 24416 : CCTCATGACTTCACATTGCTTTTGTAGTGCCATCAAATGGAATTTCACCAAGGTAAGA : 24358

vulgar:  0 149 . KB228918.1:subseq(4487468,25074) 25074 24357 - 632 M 24 72 S 0 2 5 0 2 I 0 79 3 0 2 S 1 1 M 48 144 5 0 2 I 0 80 3 0 2 M 50 150 5 0 2 I 0 99 3 0 2 M 26 78
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2015-11-26
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
KB228918.1:subseq(4487468,25074)	exonerate:protein2genome:local	gene	24358	25074	632	-	.	gene_id 1 ; sequence  ; gene_orientation +
KB228918.1:subseq(4487468,25074)	exonerate:protein2genome:local	cds	25001	25074	.	-	.	
KB228918.1:subseq(4487468,25074)	exonerate:protein2genome:local	exon	25001	25074	.	-	.	insertions 0 ; deletions 0
KB228918.1:subseq(4487468,25074)	exonerate:protein2genome:local	splice5	24999	25000	.	-	.	intron_id 1 ; splice_site "GT"
KB228918.1:subseq(4487468,25074)	exonerate:protein2genome:local	intron	24918	25000	.	-	.	intron_id 1
KB228918.1:subseq(4487468,25074)	exonerate:protein2genome:local	splice3	24918	24919	.	-	.	intron_id 0 ; splice_site "AG"
KB228918.1:subseq(4487468,25074)	exonerate:protein2genome:local	cds	24773	24917	.	-	.	
KB228918.1:subseq(4487468,25074)	exonerate:protein2genome:local	exon	24773	24917	.	-	.	insertions 0 ; deletions 0
KB228918.1:subseq(4487468,25074)	exonerate:protein2genome:local	splice5	24771	24772	.	-	.	intron_id 2 ; splice_site "GT"
KB228918.1:subseq(4487468,25074)	exonerate:protein2genome:local	intron	24689	24772	.	-	.	intron_id 2
KB228918.1:subseq(4487468,25074)	exonerate:protein2genome:local	splice3	24689	24690	.	-	.	intron_id 1 ; splice_site "ca"
KB228918.1:subseq(4487468,25074)	exonerate:protein2genome:local	cds	24539	24688	.	-	.	
KB228918.1:subseq(4487468,25074)	exonerate:protein2genome:local	exon	24539	24688	.	-	.	insertions 0 ; deletions 0
KB228918.1:subseq(4487468,25074)	exonerate:protein2genome:local	splice5	24537	24538	.	-	.	intron_id 3 ; splice_site "GG"
KB228918.1:subseq(4487468,25074)	exonerate:protein2genome:local	intron	24436	24538	.	-	.	intron_id 3
KB228918.1:subseq(4487468,25074)	exonerate:protein2genome:local	splice3	24436	24437	.	-	.	intron_id 2 ; splice_site "ag"
KB228918.1:subseq(4487468,25074)	exonerate:protein2genome:local	cds	24358	24435	.	-	.	
KB228918.1:subseq(4487468,25074)	exonerate:protein2genome:local	exon	24358	24435	.	-	.	insertions 0 ; deletions 0
KB228918.1:subseq(4487468,25074)	exonerate:protein2genome:local	similarity	24358	25074	632	-	.	alignment_id 1 ; Query  ; Align 25075 1 72 ; Align 24917 26 144 ; Align 24689 74 150 ; Align 24436 124 78
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis