Command line: [exonerate -m p2g --showtargetgff -q XPO1n/XPO1n_U.fa -t XPO1n/SUBSEQ/KB228951.1_1_subseq.txt --exhaustive yes] Hostname: [luke] C4 Alignment: ------------ Query: SPP00002949_2.0 # Protein # exportin 1 (XPO1) # Human (Homo sapiens) Target: KB228951.1:subseq(4224766,25137) Odobenus rosmarus divergens isolate Ivan unplaced genomic scaffold Scaffold74, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 862 Query range: 892 -> 1071 Target range: 25137 -> 22794 893 : GlyLeuGlnIleLeuPheThrLeuLeuGlnAsnValAlaGlnGluGluAlaAlaAlaGln : 912 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| GlyLeuGlnIleLeuPheThrLeuLeuGlnAsnValAlaGlnGluGluAlaAlaAlaGln 25137 : GGCTTACAAATACTTTTTACACTCTTACAAAATGTTGCACAAGAAGAAGCTGCAGCTCAG : 25080 913 : SerPheTyrGlnThrTyrPheCysAspIleLeuGlnHisIlePheSerValValThrAsp : 932 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| SerPheTyrGlnThrTyrPheCysAspIleLeuGlnHisIlePheSerValValThrAsp 25079 : AGTTTCTATCAAACTTATTTTTGTGATATTCTTCAGCATATCTTTTCTGTTGTGACAGAC : 25020 933 : ThrSerHisThrAla{G} >>>> Target Intron 1 >>>> {ly}LeuThrMet : 941 |||||||||||||||{|} 82 bp {||}||||||||| ThrSerHisThrAla{G}++ ++{ly}LeuThrMet 25019 : ACCTCACATACTGCT{G}gt.........................ag{GT}TTGACAATG : 24911 942 : HisAlaSerIleLeuAlaTyrMetPheAsnLeuValGluGluGlyLysIleSerThrSer : 961 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| !! HisAlaSerIleLeuAlaTyrMetPheAsnLeuValGluGluGlyLysIleSerThrPro 24910 : CATGCGTCAATACTTGCATATATGTTTAATTTGgttgaagaaggaaaaataagtacaCCG : 24851 962 : LeuAsnProGlyAsnProValAsnAsnGlnIlePheLeuGlnGluTyrValAlaAsnLeu : 981 ||||||||||||||||||||||||||||||!!:|||:!!||||||||||||||||||||| LeuAsnProGlyAsnProValAsnAsnGlnMetPheIleGlnGluTyrValAlaAsnLeu 24850 : TTAAATCCTGGAAATCCAGTTAACAACCAAATGTTCATTCAGGAATATGTGGCAAATCTC : 24791 982 : LeuLysSerAlaPheProHisLeuGln{As} >>>> Target Intron 2 >>>> : 991 |||||||||||||||||||||||||||{||} 79 bp LeuLysSerAlaPheProHisLeuGln{As}++ ++ 24790 : CTTAAATCTGCATTCCCTCATCTTCAA{GA}gt.........................ag : 24682 992 : {p}AlaGlnValLysLeuPheValThrGlyLeuPheSerLeuAsnGlnAspIleProAla : 1010 {|}||||||||||||||||||||||||||||||||||||||||||||||||||||||||| {p}AlaGlnValLysLeuPheValThrGlyLeuPheSerLeuAsnGlnAspIleProAla 24681 : {T}GCTCAAGTAAAGCTCTTTGTGACAGGGCTTTTCAGCTTAAATCAGGATATTCCTGCT : 24625 1011 : PheLysGluHisLeuArgAspPheLeuValGlnIleLys >>>> Target Intron : 1024 ||||||||||||||||||||||||||||||||||||||| 1645 bp PheLysGluHisLeuArgAspPheLeuValGlnIleLys++ 24624 : TTCAAGGAGCATCTTAGGGATTTCCTAGTACAAATAAAGgt................... : 24581 1025 : 3 >>>> GluPheAlaGlyGluAspThrSerAspLeuPheLeuGluGluArgGluIleA : 1041 |||||||||||||||||||||||||||||||||||||||||||||||| | ++GluPheAlaGlyGluAspThrSerAspLeuPheLeuGluGluArgGluThrA 24580 : ......agGAGTTTGCAGGTGAAGATACATCTGATCTGtttttggaagaaagagaaacag : 22887 1042 : laLeuArgGlnAlaAspGluGluLysHisLysArgGlnMetSerValProGlyIlePheA : 1061 ||||||||||||||.!.|||||||||||||||! !|||||||||||||||||||||.!!| laLeuArgGlnAlaGlnGluGluLysHisLysLeuGlnMetSerValProGlyIleLeuA 22886 : cccTTCGACAGGCTCAGGAAGAGAAACATAAACTTCAAATGTCTGTCCCTGGCATCCTTA : 22827 1062 : snProHisGluIleProGluGluMetCysAsp : 1071 |||||||||||||||||||||||||||||||| snProHisGluIleProGluGluMetCysAsp 22826 : ATCCACACGAAATTCCAGAAGAAATGTGTGAT : 22795 vulgar: SPP00002949_2.0 892 1071 . KB228951.1:subseq(4224766,25137) 25137 22794 - 862 M 45 135 S 0 1 5 0 2 I 0 78 3 0 2 S 1 2 M 52 156 S 0 2 5 0 2 I 0 75 3 0 2 S 1 1 M 32 96 5 0 2 I 0 1641 3 0 2 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-11-25 ##type DNA # # # seqname source feature start end score strand frame attributes # KB228951.1:subseq(4224766,25137) exonerate:protein2genome:local gene 22795 25137 862 - . gene_id 1 ; sequence SPP00002949_2.0 ; gene_orientation + KB228951.1:subseq(4224766,25137) exonerate:protein2genome:local cds 25002 25137 . - . KB228951.1:subseq(4224766,25137) exonerate:protein2genome:local exon 25002 25137 . - . insertions 0 ; deletions 0 KB228951.1:subseq(4224766,25137) exonerate:protein2genome:local splice5 25000 25001 . - . intron_id 1 ; splice_site "GT" KB228951.1:subseq(4224766,25137) exonerate:protein2genome:local intron 24920 25001 . - . intron_id 1 KB228951.1:subseq(4224766,25137) exonerate:protein2genome:local splice3 24920 24921 . - . intron_id 0 ; splice_site "AG" KB228951.1:subseq(4224766,25137) exonerate:protein2genome:local cds 24760 24919 . - . KB228951.1:subseq(4224766,25137) exonerate:protein2genome:local exon 24760 24919 . - . insertions 0 ; deletions 0 KB228951.1:subseq(4224766,25137) exonerate:protein2genome:local splice5 24758 24759 . - . intron_id 2 ; splice_site "GT" KB228951.1:subseq(4224766,25137) exonerate:protein2genome:local intron 24681 24759 . - . intron_id 2 KB228951.1:subseq(4224766,25137) exonerate:protein2genome:local splice3 24681 24682 . - . intron_id 1 ; splice_site "AG" KB228951.1:subseq(4224766,25137) exonerate:protein2genome:local cds 24584 24680 . - . KB228951.1:subseq(4224766,25137) exonerate:protein2genome:local exon 24584 24680 . - . insertions 0 ; deletions 0 KB228951.1:subseq(4224766,25137) exonerate:protein2genome:local splice5 24582 24583 . - . intron_id 3 ; splice_site "GT" KB228951.1:subseq(4224766,25137) exonerate:protein2genome:local intron 22939 24583 . - . intron_id 3 KB228951.1:subseq(4224766,25137) exonerate:protein2genome:local splice3 22939 22940 . - . intron_id 2 ; splice_site "AG" KB228951.1:subseq(4224766,25137) exonerate:protein2genome:local cds 22795 22938 . - . KB228951.1:subseq(4224766,25137) exonerate:protein2genome:local exon 22795 22938 . - . insertions 0 ; deletions 0 KB228951.1:subseq(4224766,25137) exonerate:protein2genome:local similarity 22795 25137 862 - . alignment_id 1 ; Query SPP00002949_2.0 ; Align 25138 893 135 ; Align 24918 939 156 ; Align 24680 992 96 ; Align 22939 1024 144 # --- END OF GFF DUMP --- # -- completed exonerate analysis