Command line: [exonerate -m p2g --showtargetgff -q TR1/TR1_U.fa -t TR1/SUBSEQ/KB229706.1_7_subseq.txt --exhaustive yes]
Hostname: [luke]

C4 Alignment:
------------
         Query:  TR1
        Target: KB229706.1:subseq(811635,25098) Odobenus rosmarus divergens isolate Ivan unplaced genomic scaffold Scaffold829, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 509
   Query range: 549 -> 649
  Target range: 25098 -> 9774

   550 : GluValTyrHisSerTyrPheTrpProLeuGluTrpThrIleProSerArgAspAsnAsn :   569
         :!!|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         GlnValTyrHisSerTyrPheTrpProLeuGluTrpThrIleProSerArgAspAsnAsn
 25098 : CAGGTTTACCATAGTTACTTTTGGCCGCTGGAGTGGACGATTCCATCAAGAGATAACAAC : 25041

   570 : LysCysTyrAlaLysIleIleCysAsnThrLysAspAsn  >>>> Target Intron  :   583
         |||||||||||||||:!!|||||||||! !|||||||||           3556 bp   
         LysCysTyrAlaLysValIleCysAsnIleLysAspAsn++                   
 25040 : AAATGTTATGCAAAAGTAATCTGTAATATCAAAGACAACgt................... : 24997

   584 : 1 >>>>  GluArgValValGlyPheHisValLeuGlyProAsnAlaGlyGluValThrG :   600
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||
               ++GluArgValValGlyPheHisValLeuGlyProAsnAlaGlyGluValThrG
 24996 : ......agGAACGTGTTGTGGGCTTCCACGTACTGGGTCCAAATGCTGGAGAAGTGACAC : 21392

   601 : lnGlyPheAlaAlaAlaLeuLysCysGlyLeuThrLysLysGlnLeuAspSerThrIleG :   620
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         lnGlyPheAlaAlaAlaLeuLysCysGlyLeuThrLysLysGlnLeuAspSerThrIleG
 21391 : AAGGCTTTGCAGCTGCCCTCAAGTGTGGACTGACCAAAAAGCAGCTGGACAGTACCATTG : 21332

   621 : lyIleHisProValCysAlaGlu  >>>> Target Intron 2 >>>>  ValPheTh :   630
         |||||||||||||||||||||||           11468 bp          ||||||||
         lyIleHisProValCysAlaGlu++                         ++ValPheTh
 21331 : GAATCCACCCCGTCTGTGCAGAGgt.........................agGTATTCAC :  9834

   631 : rThrLeuSerValThrLysArgSerGlyAlaSerIleLeuGlnAlaGlyCysUnkGly :   649
         ||||||||||||||||||||||||||||!.!|||||||||||||||||||||   |||
         rThrLeuSerValThrLysArgSerGlyGlySerIleLeuGlnAlaGlyCys***Gly
  9833 : GACTCTGTCGGTGACCAAGCGCTCTGGGGGAAGCATCCTCCAGGCCGGCTGCTGAGGT :  9775

vulgar:  549 649 . KB229706.1:subseq(811635,25098) 25098 9774 - 509 M 33 99 5 0 2 I 0 3552 3 0 2 M 45 135 5 0 2 I 0 11464 3 0 2 M 22 66
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2015-11-25
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
KB229706.1:subseq(811635,25098)	exonerate:protein2genome:local	gene	9775	25098	509	-	.	gene_id 1 ; sequence  ; gene_orientation +
KB229706.1:subseq(811635,25098)	exonerate:protein2genome:local	cds	25000	25098	.	-	.	
KB229706.1:subseq(811635,25098)	exonerate:protein2genome:local	exon	25000	25098	.	-	.	insertions 0 ; deletions 0
KB229706.1:subseq(811635,25098)	exonerate:protein2genome:local	splice5	24998	24999	.	-	.	intron_id 1 ; splice_site "GT"
KB229706.1:subseq(811635,25098)	exonerate:protein2genome:local	intron	21444	24999	.	-	.	intron_id 1
KB229706.1:subseq(811635,25098)	exonerate:protein2genome:local	splice3	21444	21445	.	-	.	intron_id 0 ; splice_site "AG"
KB229706.1:subseq(811635,25098)	exonerate:protein2genome:local	cds	21309	21443	.	-	.	
KB229706.1:subseq(811635,25098)	exonerate:protein2genome:local	exon	21309	21443	.	-	.	insertions 0 ; deletions 0
KB229706.1:subseq(811635,25098)	exonerate:protein2genome:local	splice5	21307	21308	.	-	.	intron_id 2 ; splice_site "GT"
KB229706.1:subseq(811635,25098)	exonerate:protein2genome:local	intron	9841	21308	.	-	.	intron_id 2
KB229706.1:subseq(811635,25098)	exonerate:protein2genome:local	splice3	9841	9842	.	-	.	intron_id 1 ; splice_site "AG"
KB229706.1:subseq(811635,25098)	exonerate:protein2genome:local	cds	9775	9840	.	-	.	
KB229706.1:subseq(811635,25098)	exonerate:protein2genome:local	exon	9775	9840	.	-	.	insertions 0 ; deletions 0
KB229706.1:subseq(811635,25098)	exonerate:protein2genome:local	similarity	9775	25098	509	-	.	alignment_id 1 ; Query  ; Align 25099 550 99 ; Align 21444 583 135 ; Align 9841 628 66
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis