Command line: [exonerate -m p2g --showtargetgff -q SelW2n/SelW2n_U.fa -t SelW2n/SUBSEQ/KB228916.1_1_subseq.txt --exhaustive yes]
Hostname: [luke]

C4 Alignment:
------------
         Query: SelW2n
        Target: KB228916.1:subseq(1167999,25161) Odobenus rosmarus divergens isolate Ivan unplaced genomic scaffold Scaffold39, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 458
   Query range: 0 -> 116
  Target range: 24271 -> 25161

     1 : MetSerGlyGluProGlyGlnThrSerValAlaProProProGluGluValGluProGly :    20
         ||||||   |||||||||! !||||||! !||||||||||||! !|||:!!|||||||||
         MetSerArgGluProGlyProThrSerGluAlaProProProGlyGluIleGluProGly
 24272 : atgagcagggagccggggCCGACGTCTGAAGCGCCCCCTCCCGGGGAGATTGAACCGGGT : 24329

    21 : SerGlyValArgIleValValGluTyr{Cy}  >>>> Target Intron 1 >>>>   :    30
         |||||||||||||||||||||||||||{||}            102 bp           
         SerGlyValArgIleValValGluTyr{Cy}++                         ++
 24330 : AGTGGGGTGCGCATCGTGGTGGAGTAC{TG}gt.........................ag : 24461

    31 : {s}GluProCysGlyPheGluAlaThrTyrLeuGluLeuAlaSerAlaValLysGluGln :    49
         {|}|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         {s}GluProCysGlyPheGluAlaThrTyrLeuGluLeuAlaSerAlaValLysGluGln
 24462 : {T}GAACCCTGCGGATTTGAAGCGACCTACCTGGAGCTGGCGAGTGCCGTGAAGGAGCAG : 24518

    50 : TyrProGlyIleGluIleGluSerArgLeuGlyGlyThr{G}  >>>> Target Intr :    63
         |||||||||||||||||||||||||||||||||||||||{|}            440 bp
         TyrProGlyIleGluIleGluSerArgLeuGlyGlyThr{G}++                
 24519 : TACCCTGGCATTGAGATCGAGTCGCGCCTGGGGGGCACA{G}gt................ : 24563

    64 : on 2 >>>>  {ly}AlaPheGluIleGluIleAsnGlyGlnLeuValPheSerLysLeu :    78
                    {||}|||||||||||||||||||||||||||||||||||||||||||||
                  ++{ly}AlaPheGluIleGluIleAsnGlyGlnLeuValPheSerLysLeu
 24564 : .........ag{GG}GCCTTTGAGATCGAAATCAATGGACAGCTGGTGTTCTCCAAGCTG : 25045

    79 : GluAsnGlyGlyPheProTyrGluLysAspValSerIleTyrSerValGlyArgThrSer :    98
         ||||||||||||||||||||||||||||||||||||||||||!:!||||||||| !! !!
         GluAsnGlyGlyPheProTyrGluLysAspValSerIleTyrAsnValGlyArgProArg
 25046 : GAGAATGGGGGCTTCCCTTATGAGAAAGATGTGAGTATTTACAATGTCGGGAGGCCCCGG : 25105

    99 : TrpSerProTyrProAsnSerAlaSerSerCysHisSerThrProLeuAlaHis :   116
         !  !!!! !  !! !.!.!!!  !! ! !!! !|||  !  !||||||||||||
         SerThrLeuProLeuGlnTrpIleIleProPheHisValCysProLeuAlaHis
 25106 : TCCACCCTTCCCCTGCAATGGATCATCCCATTCCACGTCTGCCCTCTAGCTCAT : 25161

vulgar: SelW2n 0 116 . KB228916.1:subseq(1167999,25161) 24271 25161 + 458 M 29 87 S 0 2 5 0 2 I 0 98 3 0 2 S 1 1 M 32 96 S 0 1 5 0 2 I 0 436 3 0 2 S 1 2 M 53 159
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2015-11-25
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
KB228916.1:subseq(1167999,25161)	exonerate:protein2genome:local	gene	24272	25161	458	+	.	gene_id 1 ; sequence SelW2n ; gene_orientation +
KB228916.1:subseq(1167999,25161)	exonerate:protein2genome:local	cds	24272	24360	.	+	.	
KB228916.1:subseq(1167999,25161)	exonerate:protein2genome:local	exon	24272	24360	.	+	.	insertions 0 ; deletions 0
KB228916.1:subseq(1167999,25161)	exonerate:protein2genome:local	splice5	24361	24362	.	+	.	intron_id 1 ; splice_site "GT"
KB228916.1:subseq(1167999,25161)	exonerate:protein2genome:local	intron	24361	24462	.	+	.	intron_id 1
KB228916.1:subseq(1167999,25161)	exonerate:protein2genome:local	splice3	24461	24462	.	+	.	intron_id 0 ; splice_site "AG"
KB228916.1:subseq(1167999,25161)	exonerate:protein2genome:local	cds	24463	24560	.	+	.	
KB228916.1:subseq(1167999,25161)	exonerate:protein2genome:local	exon	24463	24560	.	+	.	insertions 0 ; deletions 0
KB228916.1:subseq(1167999,25161)	exonerate:protein2genome:local	splice5	24561	24562	.	+	.	intron_id 2 ; splice_site "GT"
KB228916.1:subseq(1167999,25161)	exonerate:protein2genome:local	intron	24561	25000	.	+	.	intron_id 2
KB228916.1:subseq(1167999,25161)	exonerate:protein2genome:local	splice3	24999	25000	.	+	.	intron_id 1 ; splice_site "AG"
KB228916.1:subseq(1167999,25161)	exonerate:protein2genome:local	cds	25001	25161	.	+	.	
KB228916.1:subseq(1167999,25161)	exonerate:protein2genome:local	exon	25001	25161	.	+	.	insertions 0 ; deletions 0
KB228916.1:subseq(1167999,25161)	exonerate:protein2genome:local	similarity	24272	25161	458	+	.	alignment_id 1 ; Query SelW2n ; Align 24272 1 87 ; Align 24464 31 96 ; Align 25003 64 159
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis