Command line: [exonerate -m p2g --showtargetgff -q SelW1/SelW1_U.fa -t SelW1/SUBSEQ/KB229003.1_0_subseq.txt --exhaustive yes]
Hostname: [luke]

C4 Alignment:
------------
         Query:  SelW1
        Target: KB229003.1:subseq(198843,25074) Odobenus rosmarus divergens isolate Ivan unplaced genomic scaffold Scaffold126, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 253
   Query range: 36 -> 87
  Target range: 25074 -> 24833

    37 : CysGlyGluGlyThrProGlnAlaThrGlyPhePheGluValMetValAlaGlyLysLeu :    56
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         CysGlyGluGlyThrProGlnAlaThrGlyPhePheGluValMetValAlaGlyLysLeu
 25074 : TGTGGCGAGGGGACTCCCCAGGCCACCGGCTTCTTCGAAGTGATGGTAGCCGGGAAGCTG : 25017

    57 : IleHisSerLysLys  >>>> Target Intron 1 >>>>  LysGlyAspGlyTyrV :    67
         :!!||||||||||||            88 bp            :::|||||||||||||
         ValHisSerLysLys++                         ++ArgGlyAspGlyTyrV
 25016 : GTTCACTCCAAGAAGgt.........................agagaGGTGATGGCTACG : 24896

    68 : alAspThrGluSerLysPheLeuLysLeuValAlaAlaIleLysAlaAlaLeuAlaGlnG :    87
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         alAspThrGluSerLysPheLeuLysLeuValAlaAlaIleLysAlaAlaLeuAlaGlnG
 24895 : TGGACACAGAGAGCAAGTTTCTGAAGCTGGTGGCAGCCATCAAGGCCGCCTTGGCTCAGG : 24836

    88 : ly :    87
         ||
         ly
 24835 : GC : 24834

vulgar:  36 87 . KB229003.1:subseq(198843,25074) 25074 24833 - 253 M 25 75 5 0 2 I 0 84 3 0 2 M 26 78
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2015-11-25
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
KB229003.1:subseq(198843,25074)	exonerate:protein2genome:local	gene	24834	25074	253	-	.	gene_id 1 ; sequence  ; gene_orientation +
KB229003.1:subseq(198843,25074)	exonerate:protein2genome:local	cds	25000	25074	.	-	.	
KB229003.1:subseq(198843,25074)	exonerate:protein2genome:local	exon	25000	25074	.	-	.	insertions 0 ; deletions 0
KB229003.1:subseq(198843,25074)	exonerate:protein2genome:local	splice5	24998	24999	.	-	.	intron_id 1 ; splice_site "GT"
KB229003.1:subseq(198843,25074)	exonerate:protein2genome:local	intron	24912	24999	.	-	.	intron_id 1
KB229003.1:subseq(198843,25074)	exonerate:protein2genome:local	splice3	24912	24913	.	-	.	intron_id 0 ; splice_site "ag"
KB229003.1:subseq(198843,25074)	exonerate:protein2genome:local	cds	24834	24911	.	-	.	
KB229003.1:subseq(198843,25074)	exonerate:protein2genome:local	exon	24834	24911	.	-	.	insertions 0 ; deletions 0
KB229003.1:subseq(198843,25074)	exonerate:protein2genome:local	similarity	24834	25074	253	-	.	alignment_id 1 ; Query  ; Align 25075 37 75 ; Align 24912 62 78
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis