Command line: [exonerate -m p2g --showtargetgff -q SelR2n/SelR2n_U.fa -t SelR2n/SUBSEQ/KB229306.1_0_subseq.txt --exhaustive yes]
Hostname: [luke]

C4 Alignment:
------------
         Query: SPP00000091_2.0 # Protein # Methionine-R-sufoxide reductase 2 (SelR2) # Human (Homo sapiens)
        Target: KB229306.1:subseq(445279,25401) Odobenus rosmarus divergens isolate Ivan unplaced genomic scaffold Scaffold429, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 692
   Query range: 1 -> 182
  Target range: 24864 -> 25401

     2 : AlaArgLeuLeuTrpLeuLeuArgGlyLeuThrLeuGlyThrAlaProArgArgAlaVal :    21
         |||||||||||| ! :!!||| !!|||||| !!!!!  !  !||||||! !|||||||||
         AlaArgLeuLeuArgValLeuTrpGlyLeuProPheGlnGlyAlaProLeuArgAlaVal
 24865 : GCGCGCCTGCTCCGTGTGCTCTGGGGTTTGCCCTTTCAAGGGGCGCCCCTGCGGGCAGTG : 24922

    22 : ArgGlyGlnAlaGlyGlyGlyGlyProGlyThrGlyProGlyLeuGlyGluAlaGlySer :    41
          !!|||! !|||||| !!|||||| !!! !.!!||||||      ! !!!:|||||||||
         GlyGlyProAlaGlyArgGlyGlyAlaGluAlaGlyPro------GluAspAlaGlySer
 24923 : GGGGGCCCAGCGGGCAGAGGCGGCGCTGAGGCCGGTCCC------GAGGACGCAGGGTCT : 24976

    42 : LeuAlaThrCysGluLeuProLeuAlaLysSerGluTrpGlnLysLysLeuThrProGlu :    61
         ||| !!! !  !! !! ! !!|||.!!|||||||||||||||||||||||||||||||||
         LeuProLysHisGlyProSerLeuThrLysSerGluTrpGlnLysLysLeuThrProGlu
 24977 : CTCCCAAAGCATGGGCCATCTCTCACCAAGAGTGAATGGCAAAAGAAGCTGACTCCAGAG : 25036

    62 : GlnPheTyrValThrArgGluLysGlyThrGluProProPheSerGlyIleTyrLeuAsn :    81
         ||||||||||||||||||||||||||||||||| !!||||||||||||:!!:!!||||||
         GlnPheTyrValThrArgGluLysGlyThrGluAlaProPheSerGlyValHisLeuAsn
 25037 : CAGTTCTATGTTACGAGAGAAAAAGGAACCGAAGCGCCTTTCAGTGGGGTCCATCTGAAT : 25096

    82 : AsnLysGluAlaGlyMetTyrHisCysValCysCysAspSerProLeuPheSerSerGlu :   101
         |||||||||:!!|||!!:||||||||||||||||||||||||||||||||||||||||||
         AsnLysGluSerGlyIleTyrHisCysValCysCysAspSerProLeuPheSerSerGlu
 25097 : AACAAGGAATCAGGAATTTATCACTGTGTGTGCTGTGACAGCCCACTCTTCAGTTCCGAG : 25156

   102 : LysLysTyrCysSerGlyThrGlyTrpProSerPheSerGluAlaHisGlyThrSerGly :   121
         ||||||||||||||||||||||||||||||  !! !|||||||||||||||.!!||||||
         LysLysTyrCysSerGlyThrGlyTrpProValSerSerGluAlaHisGlyAlaSerGly
 25157 : AAAAAGTACTGCTCTGGCACTGGGTGGCCTGTGTCTTCGGAGGCGCACGGGGCGTCTGGC : 25216

   122 : SerAspGluSerHisThrGlyIleLeuArgArgLeuAspThrSerLeuGlySerAlaArg :   141
         |||||||||!!! !!|||||||||||||||!.!:!!|||! !|||||||||! !.!!!!!
         SerAspGluArgAspThrGlyIleLeuArgHisValAspIleSerLeuGlyLeuThrSer
 25217 : TCTGATGAAAGGGACACGGGCATCCTGAGACATGTGGACATCTCATTAGGATTAACTAGC : 25276

   142 : ThrGluValValCysLysGlnCysGluAlaHisLeuGlyHisValPheProAspGlyPro :   161
         |||||||||||||||||||||||||||||||||||||||:!!|||||||||||||||! !
         ThrGluValValCysLysGlnCysGluAlaHisLeuGlyTyrValPheProAspGlyLeu
 25277 : ACTGAGGTTGTCTGCAAGCAGTGTGAAGCCCATCTTGGCTACGTGTTTCCTGATGGACTC : 25336

   162 : GlyProAsnGlyGlnArgPheCysIleAsnSerValAlaLeuLysPheLysProArgLys :   181
         ||||||!:!|||||||||||||||||||||||||||||||||||||||||||||||||||
         GlyProSerGlyGlnArgPheCysIleAsnSerValAlaLeuLysPheLysProArgLys
 25337 : GGGCCTAGTGGTCAGAGGTTTTGCATCAACAGTGTGGCCCTGAAGTTCAAACCAAGGAAA : 25396

   182 : His :   182
         |||
         His
 25397 : CAC : 25401

vulgar: SPP00000091_2.0 1 182 . KB229306.1:subseq(445279,25401) 24864 25401 + 692 M 33 99 G 2 0 M 146 438
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2015-11-25
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
KB229306.1:subseq(445279,25401)	exonerate:protein2genome:local	gene	24865	25401	692	+	.	gene_id 1 ; sequence SPP00000091_2.0 ; gene_orientation .
KB229306.1:subseq(445279,25401)	exonerate:protein2genome:local	cds	24865	25401	.	+	.	
KB229306.1:subseq(445279,25401)	exonerate:protein2genome:local	exon	24865	25401	.	+	.	insertions 0 ; deletions 2
KB229306.1:subseq(445279,25401)	exonerate:protein2genome:local	similarity	24865	25401	692	+	.	alignment_id 1 ; Query SPP00000091_2.0 ; Align 24865 2 99 ; Align 24964 37 438
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis