Command line: [exonerate -m p2g --showtargetgff -q SelM/SelM_U.fa -t SelM/SUBSEQ/KB228986.1_1_subseq.txt --exhaustive yes]
Hostname: [luke]

C4 Alignment:
------------
         Query:  SelM
        Target: KB228986.1:subseq(965995,25077) Odobenus rosmarus divergens isolate Ivan unplaced genomic scaffold Scaffold109, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 324
   Query range: 0 -> 93
  Target range: 22851 -> 25077

     1 : MetSerLeuLeuLeuProProLeuAlaLeuLeuLeuLeuLeuAlaAlaLeuValAlaPro :    20
         |||  !|||! !|||||||||!     ||||||||||||||||||||||||         
         MetHisLeuProLeuProProProProLeuLeuLeuLeuLeuAlaAlaLeu---------
 22852 : ATGCACCTCCCGCTGCCTCCACCgcccctgctgctgcttctcGCGGCACTC--------- : 22903

    21 : AlaThrAlaAlaThrAlaTyrArgProAspTrpAsnArgLeuSerGlyLeuThrArgAla :    40
         |||.!!|||!.!|||.!!!:!|||||||||||||||||||||  !||||||.!!||||||
         AlaAlaAlaValThrThrPheArgProAspTrpAsnArgLeuHisGlyLeuAlaArgAla
 22904 : GCGGCCGCCGTCACTACCTTCCGGCCCGACTGGAACCGTCTGCACGGCCTGGCCCGAGCC : 22960

    41 : ArgValGlu  >>>> Target Intron 1 >>>>  ThrCysGlyGlyUnkGlnLeuA :    51
         |||||||||           1173 bp           ||||||||||||   |||||||
         ArgValGlu++                         ++ThrCysGlyGly***GlnLeuA
 22961 : CGGGTAGAGgt.........................agACCTGTGGGGGATGACAGCTGA : 24166

    52 : snArgLeuLysGlu  >>>> Target Intron 2 >>>>  ValLysAlaPheValTh :    61
         ||||||||||||||            426 bp           |||||||||||||||||
         snArgLeuLysGlu++                         ++ValLysAlaPheValTh
 24167 : ATCGCCTGAAGGAGgt.........................agGTGAAGGCCTTCGTCAC : 24622

    62 : rGlnAspIleProPhe{Ty}  >>>> Target Intron 3 >>>>  {r}HisAsnLe :    70
         |||||||||||||!!.{||}            357 bp           {|}||||||||
         rGlnAspIleProLeu{Ty}++                         ++{r}HisAsnLe
 24623 : CCAGGATATCCCTTTA{TA}gt.........................ag{T}CACAACCT : 25006

    71 : uValMetLysHisLeuProGlyAlaAspProGluLeuValLeuLeuGlyArgArgTyrGl :    90
         |||||||||||||||||||||||||||||||||||||||||||||||||!.!||||||||
         uValMetLysHisLeuProGlyAlaAspProGluLeuValLeuLeuGlyHisArgTyrGl
 25007 : GGTAATGAAACACCTTCCAGGGGCTGACCCAGAGCTCGTCCTGCTGGGCCACCGCTACGA : 25066

    91 : uGluLeuGlu :    93
         ||||||||||
         uGluLeuGlu
 25067 : AGAACTGGAG : 25077

vulgar:  0 93 . KB228986.1:subseq(965995,25077) 22851 25077 + 324 M 17 51 G 3 0 M 23 69 5 0 2 I 0 1169 3 0 2 M 12 36 5 0 2 I 0 422 3 0 2 M 11 33 S 0 2 5 0 2 I 0 353 3 0 2 S 1 1 M 26 78
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2015-11-25
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
KB228986.1:subseq(965995,25077)	exonerate:protein2genome:local	gene	22852	25077	324	+	.	gene_id 1 ; sequence  ; gene_orientation +
KB228986.1:subseq(965995,25077)	exonerate:protein2genome:local	cds	22852	22971	.	+	.	
KB228986.1:subseq(965995,25077)	exonerate:protein2genome:local	exon	22852	22971	.	+	.	insertions 0 ; deletions 3
KB228986.1:subseq(965995,25077)	exonerate:protein2genome:local	splice5	22972	22973	.	+	.	intron_id 1 ; splice_site "GT"
KB228986.1:subseq(965995,25077)	exonerate:protein2genome:local	intron	22972	24144	.	+	.	intron_id 1
KB228986.1:subseq(965995,25077)	exonerate:protein2genome:local	splice3	24143	24144	.	+	.	intron_id 0 ; splice_site "AG"
KB228986.1:subseq(965995,25077)	exonerate:protein2genome:local	cds	24145	24180	.	+	.	
KB228986.1:subseq(965995,25077)	exonerate:protein2genome:local	exon	24145	24180	.	+	.	insertions 0 ; deletions 0
KB228986.1:subseq(965995,25077)	exonerate:protein2genome:local	splice5	24181	24182	.	+	.	intron_id 2 ; splice_site "GT"
KB228986.1:subseq(965995,25077)	exonerate:protein2genome:local	intron	24181	24606	.	+	.	intron_id 2
KB228986.1:subseq(965995,25077)	exonerate:protein2genome:local	splice3	24605	24606	.	+	.	intron_id 1 ; splice_site "AG"
KB228986.1:subseq(965995,25077)	exonerate:protein2genome:local	cds	24607	24641	.	+	.	
KB228986.1:subseq(965995,25077)	exonerate:protein2genome:local	exon	24607	24641	.	+	.	insertions 0 ; deletions 0
KB228986.1:subseq(965995,25077)	exonerate:protein2genome:local	splice5	24642	24643	.	+	.	intron_id 3 ; splice_site "GT"
KB228986.1:subseq(965995,25077)	exonerate:protein2genome:local	intron	24642	24998	.	+	.	intron_id 3
KB228986.1:subseq(965995,25077)	exonerate:protein2genome:local	splice3	24997	24998	.	+	.	intron_id 2 ; splice_site "AG"
KB228986.1:subseq(965995,25077)	exonerate:protein2genome:local	cds	24999	25077	.	+	.	
KB228986.1:subseq(965995,25077)	exonerate:protein2genome:local	exon	24999	25077	.	+	.	insertions 0 ; deletions 0
KB228986.1:subseq(965995,25077)	exonerate:protein2genome:local	similarity	22852	25077	324	+	.	alignment_id 1 ; Query  ; Align 22852 1 51 ; Align 22903 21 69 ; Align 24145 44 36 ; Align 24607 56 33 ; Align 25000 68 78
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis