Command line: [exonerate -m p2g --showtargetgff -q SelI/SelI_U.fa -t SelI/SUBSEQ/KB228913.1_0_subseq.txt --exhaustive yes] Hostname: [luke] C4 Alignment: ------------ Query: SelI Target: KB228913.1:subseq(2536219,25272) Odobenus rosmarus divergens isolate Ivan unplaced genomic scaffold Scaffold36, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 1443 Query range: 100 -> 397 Target range: 25272 -> 13100 101 : TyrThrLeuAspGlyValAspGlyLysGlnAlaArgArgThrAsnSerSerThrProLeu : 120 !:!..! !||||||||||||||||||||||||||||||||||||||||||||||||||| PheValAlaAspGlyValAspGlyLysGlnAlaArgArgThrAsnSerSerThrProLeu 25272 : TTTGTTGCAGATGGTGTGGATGGAAAGCAAGCCCGGAGAACCAATTCCAGCACCCCTTTA : 25215 121 : GlyGluLeuPheAspHisGlyLeuAspSerTrpSerCysValTyrPheValValThrVal : 140 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| GlyGluLeuPheAspHisGlyLeuAspSerTrpSerCysValTyrPheValValThrVal 25214 : GGGGAGCTTTTTGACCATGGCCTGGATAGTTGGTCATGTGTTTACTTTGTTGTGACTGTG : 25155 141 : TyrSerIlePheGlyArgGlySerThrGlyValSerValPheValLeuTyrLeuLeuLeu : 160 ||||||||||||||||||||| !!:!!||||||||||||||||||||||||||||||||| TyrSerIlePheGlyArgGlyProSerGlyValSerValPheValLeuTyrLeuLeuLeu 25154 : TATTCCATCTTTGGACGAGGACCATCTGGTGTcagtgtttttgttctttatctcCTGCTA : 25095 161 : TrpValValLeuPheSerPheIleLeuSerHisTrpGluLysTyrAsnThrGlyIleLeu : 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| TrpValValLeuPheSerPheIleLeuSerHisTrpGluLysTyrAsnThrGlyIleLeu 25094 : TgggtagttttgttttctttcatcttgtccCACTGGGAAAAATATAACACAGGGATTCTT : 25035 181 : PheLeuProTrpGlyTyrAspIleSerGlnVal >>>> Target Intron 1 >>>> : 192 ||||||||||||||||||||||||||||||||| 1132 bp PheLeuProTrpGlyTyrAspIleSerGlnVal++ 25034 : TTCCTGCCGTGGGGATATGACATTAGCCAAGTGgt......................... : 24997 193 : ThrIleSerPheValTyrIleValThrAlaValValGlyValGluAlaTrpTyrGluP : 211 ||||||||||||||||||||||||||||||:!!||||||||||||||||||||||||| ++ThrIleSerPheValTyrIleValThrAlaIleValGlyValGluAlaTrpTyrGluP 24996 : agACTATATCTTTTGTCTACATAGTGACTGCGATTGTGGGAGTTGAGGCCTGGTATGAAC : 23810 212 : roPheLeuPheAsnPheLeuTyrArgAspLeuPheThrAlaMetIleIle{G} >>>> : 228 ||||||||||||||||||||||||||||||||||||||||||||||||||{|} roPheLeuPheAsnPheLeuTyrArgAspLeuPheThrAlaMetIleIle{G}++ 23809 : CTTTCCTGTTTAATTTCTTATATAGAGACCTATTCACTGCAATGATTATT{G}gt..... : 23756 229 : Target Intron 2 >>>> {ly}CysAlaLeuCysValThrLeuProMetSerLeuL : 240 5248 bp {||}|||||||||||||||||||||||||||||||||| ++{ly}CysAlaLeuCysValThrLeuProMetSerLeuL 23755 : ....................ag{GT}TGTGCGTTATGTGTGACTCTTCCAATGAGTTTAT : 18475 241 : euAsnPhePhe{Ar} >>>> Target Intron 3 >>>> {g}SerTyrLysAsnA : 249 |||||||||||{||} 1376 bp {|}||||||||||||| euAsnPhePhe{Ar}++ ++{g}SerTyrLysAsnA 18474 : TAAACTTTTTC{AG}gt.........................ag{a}agctATAAAAATA : 17072 250 : snThrLeuLysLeuAsnSerValTyrGluAlaMetValProLeuPheSerProCysLeuL : 269 |||||||||||! !|||||||||||||||||||||||||||...|||||||||||||||| snThrLeuLysHisAsnSerValTyrGluAlaMetValProPhePheSerProCysLeuL 17071 : ACACCTTGAAACACAATTCAGTCTATGAAGCTATGgttccctttttttctccatgtttgc : 17012 270 : euPheIleLeuSerThrAlaTrpIleLeuTrpSerProSerAspIleLeuGluLeuHisP : 289 ||||||||||||||||||||||||||||| !|||||||||||||||||||||||||||| euPheIleLeuSerThrAlaTrpIleLeuGlnSerProSerAspIleLeuGluLeuHisP 17011 : TATTCATTTTGTCTACAGCATGGATCCTTCAGTCGCCTTCAGATATTTTAGAGTTGCATC : 16952 290 : roArgValPheTyrPheMetValGlyThrAlaPheAlaAsnSerThr >>>> Target : 305 |||||||||||||||||||||||||||||||||||||||||! !||| 10 roArgValPheTyrPheMetValGlyThrAlaPheAlaAsnIleThr++ 16951 : CTAGAGTATTCTACTTTATGGTTGGAACAGCCTTTGCCAACATCACagt........... : 16902 306 : Intron 4 >>>> CysGlnLeuIleValCysGlnMetSerSerThrArgCysProTh : 319 62 bp |||||||||||||||||||||||||||||||||||||||||||| ++CysGlnLeuIleValCysGlnMetSerSerThrArgCysProTh 16901 : ..............agTGTCAGCTGATTGTTTGTCAAATGAGCAGCACCCGGTGCCCAAC : 15800 320 : rLeuAsnTrpLeuLeuValProLeuPheLeuValValLeuValValAsnLeuGlyValAl : 339 ||||||||||!!!||||||||||||||||||||||||||||||||||||||||||||| ! rLeuAsnTrpPheLeuValProLeuPheLeuValValLeuValValAsnLeuGlyValPr 15799 : TTTGAATTGGTTCCTGGTTCCTCTTTTCTTGGTTGTCCTGGTGGTAAACTTAGGAGTACC : 15740 340 : aSerTyrValGluSerIleLeuLeuTyrThrLeuThrThrAlaPheThrLeuAlaHisIl : 359 !||||||||||||||||||||||||:!!|||||||||.!!!.!||||||||||||||||| oSerTyrValGluSerIleLeuLeuHisThrLeuThrAlaValPheThrLeuAlaHisIl 15739 : CTCTTATGTTGAGAGCATTCTCCTGCATACTTTAACAGCTGTTTTCACTCTGGCCCACAT : 15680 360 : eHisTyrGlyValArgVal >>>> Target Intron 5 >>>> ValLysGlnLeu : 369 |||||||||||||!:!||| 2463 bp |||||||||||| eHisTyrGlyValGlnVal++ ++ValLysGlnLeu 15679 : CCATTATGGAGTACAAGTGgt.........................agGTAAAGCAGCTG : 13187 370 : SerSerHisPheGlnIleTyrProPheSerLeuArgLysProAsnSerAspUnkLeuGly : 389 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| SerSerHisPheGlnIleTyrProPheSerLeuArgLysProAsnSerAsp***LeuGly 13186 : AGCAGCCATTTTCAGATTTATCCCTTCTCGTTGAGGAAACCAAACTCGGATTGACtagga : 13127 390 : MetGluGluLysAsnIleGlyLeu : 397 ||||||||||||||| |||||| MetGluGluLysAsnSerGlyLeu 13126 : atggaagaaaagaatagtggCCTG : 13101 vulgar: 100 397 . KB228913.1:subseq(2536219,25272) 25272 13100 - 1443 M 91 273 5 0 2 I 0 1128 3 0 2 M 36 108 S 0 1 5 0 2 I 0 5244 3 0 2 S 1 2 M 15 45 S 0 2 5 0 2 I 0 1372 3 0 2 S 1 1 M 60 180 5 0 2 I 0 1058 3 0 2 M 61 183 5 0 2 I 0 2459 3 0 2 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-11-25 ##type DNA # # # seqname source feature start end score strand frame attributes # KB228913.1:subseq(2536219,25272) exonerate:protein2genome:local gene 13101 25272 1443 - . gene_id 1 ; sequence ; gene_orientation + KB228913.1:subseq(2536219,25272) exonerate:protein2genome:local cds 25000 25272 . - . KB228913.1:subseq(2536219,25272) exonerate:protein2genome:local exon 25000 25272 . - . insertions 0 ; deletions 0 KB228913.1:subseq(2536219,25272) exonerate:protein2genome:local splice5 24998 24999 . - . intron_id 1 ; splice_site "GT" KB228913.1:subseq(2536219,25272) exonerate:protein2genome:local intron 23868 24999 . - . intron_id 1 KB228913.1:subseq(2536219,25272) exonerate:protein2genome:local splice3 23868 23869 . - . intron_id 0 ; splice_site "AG" KB228913.1:subseq(2536219,25272) exonerate:protein2genome:local cds 23759 23867 . - . KB228913.1:subseq(2536219,25272) exonerate:protein2genome:local exon 23759 23867 . - . insertions 0 ; deletions 0 KB228913.1:subseq(2536219,25272) exonerate:protein2genome:local splice5 23757 23758 . - . intron_id 2 ; splice_site "GT" KB228913.1:subseq(2536219,25272) exonerate:protein2genome:local intron 18511 23758 . - . intron_id 2 KB228913.1:subseq(2536219,25272) exonerate:protein2genome:local splice3 18511 18512 . - . intron_id 1 ; splice_site "ag" KB228913.1:subseq(2536219,25272) exonerate:protein2genome:local cds 18462 18510 . - . KB228913.1:subseq(2536219,25272) exonerate:protein2genome:local exon 18462 18510 . - . insertions 0 ; deletions 0 KB228913.1:subseq(2536219,25272) exonerate:protein2genome:local splice5 18460 18461 . - . intron_id 3 ; splice_site "GT" KB228913.1:subseq(2536219,25272) exonerate:protein2genome:local intron 17086 18461 . - . intron_id 3 KB228913.1:subseq(2536219,25272) exonerate:protein2genome:local splice3 17086 17087 . - . intron_id 2 ; splice_site "ag" KB228913.1:subseq(2536219,25272) exonerate:protein2genome:local cds 16905 17085 . - . KB228913.1:subseq(2536219,25272) exonerate:protein2genome:local exon 16905 17085 . - . insertions 0 ; deletions 0 KB228913.1:subseq(2536219,25272) exonerate:protein2genome:local splice5 16903 16904 . - . intron_id 4 ; splice_site "gt" KB228913.1:subseq(2536219,25272) exonerate:protein2genome:local intron 15843 16904 . - . intron_id 4 KB228913.1:subseq(2536219,25272) exonerate:protein2genome:local splice3 15843 15844 . - . intron_id 3 ; splice_site "AG" KB228913.1:subseq(2536219,25272) exonerate:protein2genome:local cds 15660 15842 . - . KB228913.1:subseq(2536219,25272) exonerate:protein2genome:local exon 15660 15842 . - . insertions 0 ; deletions 0 KB228913.1:subseq(2536219,25272) exonerate:protein2genome:local splice5 15658 15659 . - . intron_id 5 ; splice_site "GT" KB228913.1:subseq(2536219,25272) exonerate:protein2genome:local intron 13197 15659 . - . intron_id 5 KB228913.1:subseq(2536219,25272) exonerate:protein2genome:local splice3 13197 13198 . - . intron_id 4 ; splice_site "AG" KB228913.1:subseq(2536219,25272) exonerate:protein2genome:local cds 13101 13196 . - . KB228913.1:subseq(2536219,25272) exonerate:protein2genome:local exon 13101 13196 . - . insertions 0 ; deletions 0 KB228913.1:subseq(2536219,25272) exonerate:protein2genome:local similarity 13101 25272 1443 - . alignment_id 1 ; Query ; Align 25273 101 273 ; Align 23868 192 108 ; Align 18509 229 45 ; Align 17085 245 180 ; Align 15843 305 183 ; Align 13197 366 96 # --- END OF GFF DUMP --- # -- completed exonerate analysis