Command line: [exonerate -m p2g --showtargetgff -q SelH/SelH_U.fa -t SelH/SUBSEQ/KB229300.1_0_subseq.txt --exhaustive yes]
Hostname: [luke]

C4 Alignment:
------------
         Query:  SelH
        Target: KB229300.1:subseq(582472,25362) Odobenus rosmarus divergens isolate Ivan unplaced genomic scaffold Scaffold423, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 496
   Query range: 0 -> 122
  Target range: 24794 -> 25362

     1 : MetAlaProArgGlyArgLysArgLysAlaGluAlaAlaValValAlaValAlaGluLys :    20
         |||||| !!||||||||||||||||||||||||!.!||||||||||||!.!|||! !|||
         MetAlaSerArgGlyArgLysArgLysAlaGluValAlaValValAlaAlaAlaAlaLys
 24795 : ATGGCTTCTCGCGGGAGAAAGCGGAAGGCCGAGGTGGCGGTGGTCGCGGCGGCGGCGAAA : 24852

    21 : ArgGluLysLeuAlaAsnGlyGlyGluGlyMetGluGluAlaThrValValIleGluHis :    40
         !:!||||||! !|||..!||| !!:!!!.!:!!|||!  |||||||||||||||||||||
         GlnGluLysProAlaGlyGlyArgLysAlaValGluAlaAlaThrValValIleGluHis
 24853 : CAGGAGAAGCCGGCGGGCGGCCGGAAGGCAGTGGAGGCCGCGACCGTCGTAATCGAGCAT : 24912

    41 : {Cy}  >>>> Target Intron 1 >>>>  {s}ThrSerUnkArgValTyrGlyArg :    49
         {||}            85 bp            {|}||||||   |||||||||||||||
         {Cy}++                         ++{s}ThrSer***ArgValTyrGlyArg
 24913 : {TG}gt.........................ag{C}ACGAGCTGACGCGTCTACGGGCGC : 25024

    50 : AsnAlaAlaAlaLeuSerGlnAlaLeuArgLeuGluAlaProGluLeuProValLysVal :    69
         ||||||||||||||||||||||||||||||||||||.!!|||||||||||||||:!!|||
         AsnAlaAlaAlaLeuSerGlnAlaLeuArgLeuGluThrProGluLeuProValGluVal
 25025 : AACGCCGCGGCCCTGAGCCAGGCGTTGCGCCTGGAGACCCCGGAGCTTCCGGTGGAGGTG : 25084

    70 : AsnProThrLysProArgArgGlySerPheGluValThrLeuLeuArgProAspGlySer :    89
         ||||||.!!|||||||||||||||||||||||||||||||||||||||||||||||||||
         AsnProAlaLysProArgArgGlySerPheGluValThrLeuLeuArgProAspGlySer
 25085 : AATCCTGCCAAGCCCCGGAGGGGCAGCTTCGAGGTGACGCTGCTGCGCCCAGACGGCAGC : 25144

    90 : {S}  >>>> Target Intron 2 >>>>  {er}AlaGluLeuTrpThrGlyIleLys :    98
         {|}            117 bp           {||}!.!|||||||||||||||||||||
         {S}++                         ++{er}ValGluLeuTrpThrGlyIleLys
 25145 : {A}gt.........................ag{GT}GTGGAGCTCTGGACTGGGATTAAG : 25288

    99 : LysGlyProProArgLysLeuLysPheProGluProGlnGluValValGluGluLeuLys :   118
         ||||||||||||||||||||||||||||||||||||||||||||||||:!!|||||||||
         LysGlyProProArgLysLeuLysPheProGluProGlnGluValValLysGluLeuLys
 25289 : AAGGGGCCCCCACGCAAACTCAAGTTCCCTGAGCCTCAAGAGGTGGTGAAGGAGCTGAAG : 25348

   119 : LysTyrLeuSer :   122
         |||:!!||||||
         LysHisLeuSer
 25349 : AAGCACCTTTCC : 25362

vulgar:  0 122 . KB229300.1:subseq(582472,25362) 24794 25362 + 496 M 40 120 S 0 2 5 0 2 I 0 81 3 0 2 S 1 1 M 48 144 S 0 1 5 0 2 I 0 113 3 0 2 S 1 2 M 32 96
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2015-11-25
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
KB229300.1:subseq(582472,25362)	exonerate:protein2genome:local	gene	24795	25362	496	+	.	gene_id 1 ; sequence  ; gene_orientation +
KB229300.1:subseq(582472,25362)	exonerate:protein2genome:local	cds	24795	24916	.	+	.	
KB229300.1:subseq(582472,25362)	exonerate:protein2genome:local	exon	24795	24916	.	+	.	insertions 0 ; deletions 0
KB229300.1:subseq(582472,25362)	exonerate:protein2genome:local	splice5	24917	24918	.	+	.	intron_id 1 ; splice_site "GT"
KB229300.1:subseq(582472,25362)	exonerate:protein2genome:local	intron	24917	25001	.	+	.	intron_id 1
KB229300.1:subseq(582472,25362)	exonerate:protein2genome:local	splice3	25000	25001	.	+	.	intron_id 0 ; splice_site "AG"
KB229300.1:subseq(582472,25362)	exonerate:protein2genome:local	cds	25002	25147	.	+	.	
KB229300.1:subseq(582472,25362)	exonerate:protein2genome:local	exon	25002	25147	.	+	.	insertions 0 ; deletions 0
KB229300.1:subseq(582472,25362)	exonerate:protein2genome:local	splice5	25148	25149	.	+	.	intron_id 2 ; splice_site "GT"
KB229300.1:subseq(582472,25362)	exonerate:protein2genome:local	intron	25148	25264	.	+	.	intron_id 2
KB229300.1:subseq(582472,25362)	exonerate:protein2genome:local	splice3	25263	25264	.	+	.	intron_id 1 ; splice_site "AG"
KB229300.1:subseq(582472,25362)	exonerate:protein2genome:local	cds	25265	25362	.	+	.	
KB229300.1:subseq(582472,25362)	exonerate:protein2genome:local	exon	25265	25362	.	+	.	insertions 0 ; deletions 0
KB229300.1:subseq(582472,25362)	exonerate:protein2genome:local	similarity	24795	25362	496	+	.	alignment_id 1 ; Query  ; Align 24795 1 120 ; Align 25003 42 144 ; Align 25267 91 96
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis