Command line: [exonerate -m p2g --showtargetgff -q SPS2/SPS2_U.fa -t SPS2/SUBSEQ/KB228942.1_0_subseq.txt --exhaustive yes]
Hostname: [luke]

C4 Alignment:
------------
         Query:  SPS2
        Target: KB228942.1:subseq(3077522,51376) Odobenus rosmarus divergens isolate Ivan unplaced genomic scaffold Scaffold65, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 2187
   Query range: 25 -> 483
  Target range: 51376 -> 49999

    26 : LeuThrLeuGlyArgSerPheSerAsnTyrArgProPheGluProGlnAlaLeuGlyLeu :    45
         |||:!!|||||||||.!!||||||!:!|||||||||||||||||||||||||||||||||
         LeuSerLeuGlyArgGlyPheSerSerTyrArgProPheGluProGlnAlaLeuGlyLeu
 51376 : TTGTCTCTGGGCCGGGGCTTCTCGAGCTACCGGCCCTTCGAGCCCCAGGCGCTGGGCCTC : 51319

    46 : SerProSerTrpArgLeuThrGlyPheSerGlyMetLysGlyUnkGlyCysLysValPro :    65
         ||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||
         SerProSerTrpArgLeuThrGlyPheSerGlyMetLysGly***GlyCysLysValPro
 51318 : AGCCCGAGCTGGCGGCTGACCGGCTTCTCCGGCATGAAGGGCTGAGGCTGCAAGGTCCCC : 51259

    66 : GlnGluAlaLeuLeuLysLeuLeuAlaGlyLeuThrArgProAspValArgProProLeu :    85
         ||||||.!!|||||||||||||||||||||||||||||||||||||||||||||||||||
         GlnGluThrLeuLeuLysLeuLeuAlaGlyLeuThrArgProAspValArgProProLeu
 51258 : CAGGAGACGCTGCTCAAACTCCTGGCGGGACTGACGCGACCAGACGTGCGGCCCccgctg : 51199

    86 : GlyArgGlyLeuValGlyGlyGlnGluGluAlaSerGlnGluAlaGlyLeuProAlaGly :   105
         |||   |||||||||||||||!!.|||||||||:!!||||||!.!|||||||||||||||
         GlyLeuGlyLeuValGlyGlyHisGluGluAlaAlaGlnGluGlyGlyLeuProAlaGly
 51198 : ggcctgggcctggtcGGAGGCCATGAAGAGGCGGCCCAGGAAGGCGGCCTACCGGCCGGG : 51139

   106 : AlaGlyProSerProThrPheProAlaLeuGlyIleGlyMetAspSerCysValIlePro :   125
         |||! !|||!:!||||||||||||||||||||||||||||||||||||||||||||||||
         AlaGluProAsnProThrPheProAlaLeuGlyIleGlyMetAspSerCysValIlePro
 51138 : GCCGAACCCAACCCCACCTTTCCAGCCCTGGGCATTGGGATGGACTCCTGCGTCATACCC : 51079

   126 : LeuArgHisGlyGlyLeuSerLeuValGlnThrThrAspPhePheTyrProLeuValGlu :   145
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         LeuArgHisGlyGlyLeuSerLeuValGlnThrThrAspPhePheTyrProLeuValGlu
 51078 : CTGAGGCACGGGGGTCTGTCACTGGTGCAGACTACAGACTTCTTTTACCCCTTGGTGGAA : 51019

   146 : AspProTyrMetMetGlyArgIleAlaCysAlaAsnValLeuSerAspLeuTyrAlaMet :   165
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         AspProTyrMetMetGlyArgIleAlaCysAlaAsnValLeuSerAspLeuTyrAlaMet
 51018 : GATCCCTACATGATGGGGCGCATAGCGTGTGCCAACGTGCTGAGTGACCTCTACGCCATG : 50959

   166 : GlyIleThrGluCysAspAsnMetLeuMetLeuLeuSerValSerGlnSerMetSerGlu :   185
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||!!!|||
         GlyIleThrGluCysAspAsnMetLeuMetLeuLeuSerValSerGlnSerMetThrGlu
 50958 : GGCATTACTGAATGTGACAACATGTTGATGTTACTCAGCGTCAGCCAGAGTATGACTGAG : 50899

   186 : GluGluArgGluLysValThrProLeuMetValLysGlyPheArgAspAlaAlaGluGlu :   205
         |||||||||||||||:!!||||||||||||:!!|||||||||||||||||||||||||||
         GluGluArgGluLysIleThrProLeuMetIleLysGlyPheArgAspAlaAlaGluGlu
 50898 : GAGGAGCGAGAAAAGATAACACCACTCATGATCAAAGGCTTTCGTGATGCTGCTGAGGAA : 50839

   206 : GlyGlyThrAlaValThrGlyGlyGlnThrValValAsnProTrpIleIleIleGlyGly :   225
         |||||||||||||||||||||||||||||||||||||||||||||||||||:!!||||||
         GlyGlyThrAlaValThrGlyGlyGlnThrValValAsnProTrpIleIleValGlyGly
 50838 : GGAGGGACTGCAGTGACTGGTGGACAAACGGTGGTAAACCCTTGGATTATCGTCGGTGGG : 50779

   226 : ValAlaThrValValCysGlnProAsnGluPheIleMetProAspSerAlaValValGly :   245
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         ValAlaThrValValCysGlnProAsnGluPheIleMetProAspSerAlaValValGly
 50778 : GTTGCCACTGTGGTATGTCAGCCAAATGAATTCATCATGCCCGACAGTGCAGTTGTTGGG : 50719

   246 : AspValLeuValLeuThrLysProLeuGlyThrGlnValAlaValAsnAlaHisGlnTrp :   265
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         AspValLeuValLeuThrLysProLeuGlyThrGlnValAlaValAsnAlaHisGlnTrp
 50718 : GATGTGCTCGTGTTAACCAAACCCTTAGGAACCCAAGTTGCTGTCAATGCCCACCAATGG : 50659

   266 : LeuAspAsnProGluArgTrpAsnLysValLysMetValValSerArgGluGluValGlu :   285
         |||||||||||||||||||||||||||:::...|||||||||||||||||||||||||||
         LeuAspAsnProGluArgTrpAsnLysIleAsnMetValValSerArgGluGluValGlu
 50658 : CTGGATAATCCGGAgagatggaataaaataaatatggtgGTCTCCAGAGAAGAAGTAGAG : 50599

   286 : LeuAlaTyrGlnGluAlaMetPheAsnMetAlaThrLeuAsnArgThrAlaAlaGlyLeu :   305
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         LeuAlaTyrGlnGluAlaMetPheAsnMetAlaThrLeuAsnArgThrAlaAlaGlyLeu
 50598 : CTGGCTTATCAGGAAGCCATGTTCAACATGGCTACCCTAAACAGAACTGCTGCTGGATTA : 50539

   306 : MetHisThrPheAsnAlaHisAlaAlaThrAspIleThrGlyPheGlyIleLeuGlyHis :   325
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         MetHisThrPheAsnAlaHisAlaAlaThrAspIleThrGlyPheGlyIleLeuGlyHis
 50538 : ATGCACACGTTTAATGCACACGCAGCCACGGATATCACAGGCTTTGGCATCCTAGGACAC : 50479

   326 : SerGlnAsnLeuAlaLysGlnGlnArgAsnGluValSerPheValIleHisAsnLeuPro :   345
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         SerGlnAsnLeuAlaLysGlnGlnArgAsnGluValSerPheValIleHisAsnLeuPro
 50478 : TCTCAGAACCTTGCAAAACAACAAAGAAACGAGGTGTCCTTTGTCATTCATAATCTGCCA : 50419

   346 : IleIleAlaLysMetAlaAlaValSerLysAlaSerGlyArgPheGlyLeuLeuGlnGly :   365
         |||||||||||||||||||||:!!||||||||||||||||||||||||||||||||||||
         IleIleAlaLysMetAlaAlaIleSerLysAlaSerGlyArgPheGlyLeuLeuGlnGly
 50418 : ATTATTGCCAAGATGGCTGCCATCAGCAAGGCCAGTGGGCGCTTTGGGCTCCTTCAAGGA : 50359

   366 : ThrSerAlaGluThrSerGlyGlyLeuLeuIleCysLeuProArgGluGlnAlaAlaArg :   385
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         ThrSerAlaGluThrSerGlyGlyLeuLeuIleCysLeuProArgGluGlnAlaAlaArg
 50358 : ACCTCAGCAGAAACTTCTGGGGGATTACTGATTTGTCTGCCAAGAGAACAGGCAGCTCGC : 50299

   386 : PheCysSerGluIleLysSerSerLysTyrGlyGluGlyHisGlnAlaTrpIleValGly :   405
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         PheCysSerGluIleLysSerSerLysTyrGlyGluGlyHisGlnAlaTrpIleValGly
 50298 : TTTTGTTCTGAAATCAAATCTTCCAAGTATGGAGAGGGTCACCAAGCATGGATCGTCGGT : 50239

   406 : IleValGluLysGlyAsnArgThrAlaArgIleIleAspLysProArgValIleGluVal :   425
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         IleValGluLysGlyAsnArgThrAlaArgIleIleAspLysProArgValIleGluVal
 50238 : ATTGTGGAAAAGGGAAACCGGACAGCCCGGATCATTGACAAGCCTCGAGTTATTGAGGTC : 50179

   426 : LeuProArgGlyAlaThrAlaAlaValLeuAlaProAspSerSerAsnAlaSerSerGlu :   445
         |||||||||||||||||||||.!!!.!||||||||||||!:!|||!:!||||||||||||
         LeuProArgGlyAlaThrAlaThrAlaLeuAlaProAspAsnSerSerAlaSerSerGlu
 50178 : CTACCTCGTGGGGCCACTGCTACTGCTCTTGCTCCTGACAATTCCAGTGCCTCCTCTGAG : 50119

   446 : ProSerSerUnkAspGluArgThrGluValValTrpThrLeuGluProLeuSerThrIle :   465
         |||||||||   |||! !! !.!!|||||||||||||||||||||||||||! !||||||
         ProSerSer***AspGlyIleAlaGluValValTrpThrLeuGluProLeuTyrThrIle
 50118 : CCTAGTTCGTGAGATGGAATAGCAGAAGTTGTTTGGACCTTAGAGCCTCTGTACACAATC : 50059

   466 : ThrAspGlySerGlnGluLeuIleVal<->ArgAsnPheGlnArgArgLeuProAla :   483
         ! !:!!! !||||||......|||:::   |||||||||||||||||||||||||||
         IleAsnAspSerGlnAsnPheIleLeuArgArgAsnPheGlnArgArgLeuProAla
 50058 : ATTAACGATTCTCAGAactttattttaagaagaaatttccAAAGAAGGCTGCCTGCA : 50000

vulgar:  25 483 . KB228942.1:subseq(3077522,51376) 51376 49999 - 2187 M 449 1347 G 0 3 M 9 27
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2015-11-26
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
KB228942.1:subseq(3077522,51376)	exonerate:protein2genome:local	gene	50000	51376	2187	-	.	gene_id 1 ; sequence  ; gene_orientation .
KB228942.1:subseq(3077522,51376)	exonerate:protein2genome:local	cds	50000	51376	.	-	.	
KB228942.1:subseq(3077522,51376)	exonerate:protein2genome:local	exon	50000	51376	.	-	.	insertions 3 ; deletions 0
KB228942.1:subseq(3077522,51376)	exonerate:protein2genome:local	similarity	50000	51376	2187	-	.	alignment_id 1 ; Query  ; Align 51377 26 1347 ; Align 50027 475 27
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis