Command line: [exonerate -m p2g --showtargetgff -q SPS1n/SPS1n_U.fa -t SPS1n/SUBSEQ/KB229658.1_1_subseq.txt --exhaustive yes]
Hostname: [luke]

C4 Alignment:
------------
         Query: SPP00000061_2.0 # Protein # Selenophosphate synthetase 1 (SPS1) # Human (Homo sapiens)
        Target: KB229658.1:subseq(40608,25398) Odobenus rosmarus divergens isolate Ivan unplaced genomic scaffold Scaffold781, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 812
   Query range: 80 -> 279
  Target range: 25398 -> 24815

    81 : SerLeuValGlnThrThrAspTyrIleTyrProIleValAspAspProTyrMetMetGly :   100
         ||||||||||||||||||||||||||||||||||||:!!! !|||||||||:!!||||||
         SerLeuValGlnThrThrAspTyrIleTyrProIleIleGlyAspProTyrValMetGly
 25398 : TCTCTGGTTCAAACCACGGATTACATCTATCCTATCATCGGTGACCCTTATGTGATGGGC : 25341

   101 : ArgIleAlaCysAlaAsnValLeuSerAspLeuTyrAlaMetGlyValThrGluCysAsp :   120
         |||||||||||||||||||||!!!||||||||||||||||||||||||||||||||||||
         ArgIleAlaCysAlaAsnValPheSerAspLeuTyrAlaMetGlyValThrGluCysAsp
 25340 : AGGATAGCATGTGCCAACGTCTTCAGTGACCTCTACGCCATGGGGGTCACGGAATGTGAC : 25281

   121 : AsnMetLeuMetLeuLeuGlyValSerAsnLysMetThrAspArgGluArgAspLysVal :   140
         |||||||||||||||!!!|||:!!||||||||||||||||||||||||||||||||||||
         AsnMetLeuMetLeuPheGlyIleSerAsnLysMetThrAspArgGluArgAspLysVal
 25280 : AATATGCTGATGCTCTTTGGAATCAGTAATAAAATGACCGACAGGGAAAGGGATAAAGTG : 25221

   141 : MetProLeuIleIleGlnGlyPheLysAspAlaAlaGluGluAlaGlyThrSerValThr :   160
         ||||||||||||||||||||||||||||||||||||:!!!!:||||||||||||||||||
         MetProLeuIleIleGlnGlyPheLysAspAlaAlaLysAspAlaGlyThrSerValThr
 25220 : ATGCCCCTAATTATACAGGGTTTTAAAGATGCAGCAAAGGACGCAGGAACATCTGTGACC : 25161

   161 : GlyGlyGlnThrValLeuAsnProTrpIleValLeuGlyGlyValAlaThrThrValCys :   180
         |||||||||! !||||||||||||||||||||||||||||||||||||||||||||||||
         GlyGlyGlnMetValLeuAsnProTrpIleValLeuGlyGlyValAlaThrThrValCys
 25160 : GGTGGCCAGATGGTGTTAAACCCCTGGATTGTTCTGGGAGGAGTGGCCACAACTGTCTGC : 25101

   181 : GlnProAsnGluPheIleMetProAspAsnAlaValProGlyAspValLeuValLeuThr :   200
         ||||||!:!||||||:!!|||! !||||||  !||||||||||||||||||||||||! !
         GlnProSerGluPheLeuMetLeuAspAsnMetValProGlyAspValLeuValLeuMet
 25100 : CAGCCCAGTGAATTTCTCATGCTGGATAACATGGTGCCGGGGGACGTGCTTGTGCTGATG : 25041

   201 : LysProLeuGlyThrGlnValAlaValAlaValHisGlnTrpLeuAspIle-ProGluLy :   220
         ||| !!||||||||||||:!!|||||||||||||||               #||||||||
         LysThrLeuGlyThrGlnMetAlaValAlaValHis---------------#ProGluLy
 25040 : AAGACCCTGGGGACGCAGATGGCTGTGGCTGTACAT---------------TCCTGAAAA : 24995

   221 : sTrpAsnLysIleLysLeuValValThrGlnGluAspValGluLeuAlaTyrGlnGluAl :   240
         ||||||||||||||||||||||||||||||||||||||||:!!|||||||||||||||||
         sTrpAsnLysIleLysLeuValValThrGlnGluAspValLysLeuAlaTyrGlnGluAl
 24994 : ATGGAATAAGATCAAACTAGTGGTCACCCAAGAAGACGTCAAGTTGGCGTACCAGGAGGC : 24935

   241 : aMetMetAsnMetAlaArgLeuAsnArgThrAlaAlaGlyLeuMetHisThrPheAsnAl :   260
         |||||||||||||!.!!:!|||||||||||||||  !||||||||||||! !|||!:!||
         aMetMetAsnMetValLysLeuAsnArgThrAlaLeuGlyLeuMetHisMetPheSerAl
 24934 : AATGATGAACATGGTGAAGCTCAACAGAACAGCTTTGGGGCTCATGCACATGTTCAGTGC : 24875

   261 : aHisAlaAlaThrAspIleThrGlyPheGlyIleLeuGlyHisAlaGlnAsnLeuAla :   279
         ||||.!!|||||||||||||||.!!||||||||||||||||||!.!||||||||||||
         aHisThrAlaThrAspIleThrSerPheGlyIleLeuGlyHisValGlnAsnLeuAla
 24874 : CCACACCGCTACTGACATCACAAGCTTTGGAATTTTGGGTCATGTGCAGAAcctggcc : 24816

vulgar: SPP00000061_2.0 80 279 . KB229658.1:subseq(40608,25398) 25398 24815 - 812 M 132 396 G 5 0 F 0 1 M 62 186
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2015-11-25
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
KB229658.1:subseq(40608,25398)	exonerate:protein2genome:local	gene	24816	25398	812	-	.	gene_id 1 ; sequence SPP00000061_2.0 ; gene_orientation .
KB229658.1:subseq(40608,25398)	exonerate:protein2genome:local	cds	24816	25398	.	-	.	
KB229658.1:subseq(40608,25398)	exonerate:protein2genome:local	exon	24816	25398	.	-	.	insertions 0 ; deletions 5 ; frameshifts 1
KB229658.1:subseq(40608,25398)	exonerate:protein2genome:local	similarity	24816	25398	812	-	.	alignment_id 1 ; Query SPP00000061_2.0 ; Align 25399 81 396 ; Align 25002 218 186
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis