Command line: [exonerate -m p2g --showtargetgff -q SEPSECSn/SEPSECSn_U.fa -t SEPSECSn/SUBSEQ/KB229054.1_0_subseq.txt --exhaustive yes]
Hostname: [luke]

C4 Alignment:
------------
         Query: SEPSECSn
        Target: KB229054.1:subseq(3235789,25302) Odobenus rosmarus divergens isolate Ivan unplaced genomic scaffold Scaffold177, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 389
   Query range: 403 -> 500
  Target range: 25302 -> 24999

   404 : ArgValValProLeuGlySerMetGlnThrValSerGlyTyrThrPheArgGlyPheMet :   423
         |||||||||||||||||||||:!!|||||||||||||||:!!||||||||||||||||||
         ArgValValProLeuGlySerValGlnThrValSerGlyHisThrPheArgGlyPheMet
 25302 : AGGGTTGTGCCTCTTGGGTCTGTGCAAACCGTGAGTGGCCACACTTTCCGAGGCTTTATG : 25245

   424 : SerHisThrAsnAsnTyrProCysAlaTyrLeuAsnAlaAlaSerAlaIleGlyMetLys :   443
         ||||||.!!|||:!!|||||||||:!!|||||||||||||||:!!|||||||||||||||
         SerHisAlaAsnHisTyrProCysSerTyrLeuAsnAlaAlaAlaAlaIleGlyMetLys
 25244 : TCACATGCCAATCATTACCCTTGCTCTTACCTCAATGCTGCAGCGGCCATCGGAATGAAG : 25185

   444 : MetGlnAspValAspLeuPheIleLysArgLeuAspArgCysLeuLysAlaValArgLys :   463
         !  ||||||||||||||||||!!:||||||||||||!:!|||||||||   |||||||||
         ThrGlnAspValAspLeuPheMetLysArgLeuAspLysCysLeuLysIleValArgLys
 25184 : ACACAGGATGTGGATTTGTTCATGAAGAGACTTGACAAGTGTTTAAAGATagtaagaaaa : 25125

   464 : GluArgSerLysGluSerAsp<-><-><-><->AspAsnTyrAspLysThrGluAspVal :   479
         |||::::::|||||||||:!!            |||||||||||||||||||||||||||
         GluGlnAsnLysGluSerAsnAlaSerGlyValAspAsnTyrAspLysThrGluAspVal
 25124 : gaacaaaataaagagagTAATGCATCTGGGGTTGACAATTACGACAAAACTGAAGATGTG : 25065

   480 : AspIleGluGluMetAlaLeuLysLeuAspAsnValLeuLeuAspThrTyrGlnAspAla :   499
         ! !|||||||||||||||||||||||||||||||||||||||||||||||||||:!!:!!
         GlyIleGluGluMetAlaLeuLysLeuAspAsnValLeuLeuAspThrTyrGlnAsnSer
 25064 : GGTATTGAAGAGATGGCTTTAAAACTAGATAATGTGCTTCTTGACACGTACCAGAATTCT : 25005

   500 : Ser :   500
         |||
         Ser
 25004 : TCA : 25000

vulgar: SEPSECSn 403 500 . KB229054.1:subseq(3235789,25302) 25302 24999 - 389 M 67 201 G 0 12 M 30 90
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2015-11-25
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
KB229054.1:subseq(3235789,25302)	exonerate:protein2genome:local	gene	25000	25302	389	-	.	gene_id 1 ; sequence SEPSECSn ; gene_orientation .
KB229054.1:subseq(3235789,25302)	exonerate:protein2genome:local	cds	25000	25302	.	-	.	
KB229054.1:subseq(3235789,25302)	exonerate:protein2genome:local	exon	25000	25302	.	-	.	insertions 12 ; deletions 0
KB229054.1:subseq(3235789,25302)	exonerate:protein2genome:local	similarity	25000	25302	389	-	.	alignment_id 1 ; Query SEPSECSn ; Align 25303 404 201 ; Align 25090 471 90
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis