Command line: [exonerate -m p2g --showtargetgff -q SELENBP1n/SELENBP1n_U.fa -t SELENBP1n/SUBSEQ/KB229087.1_1_subseq.txt --exhaustive yes] Hostname: [luke] C4 Alignment: ------------ Query: SPP00002942_2.0 # Protein # selenium binding protein 1 (SELENBP1) # Human (Homo sapiens) Target: KB229087.1:subseq(1475170,25128) Odobenus rosmarus divergens isolate Ivan unplaced genomic scaffold Scaffold210, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 844 Query range: 348 -> 514 Target range: 25128 -> 24004 349 : ProGlyLeuIleThrAspIleLeuLeuSerLeuAspAspArgPheLeuTyrPheSerAsn : 368 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ProGlyLeuIleThrAspIleLeuLeuSerLeuAspAspArgPheLeuTyrPheSerAsn 25128 : ccaggcctgaTCACAGACATCCTGCTGTCTCTGGATGACCGCTTCCTCTACTTCAGCAAC : 25071 369 : TrpLeuHisGlyAspLeuArgGlnTyrAspIleSerAspProGlnArgProArgLeuThr : 388 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| TrpLeuHisGlyAspLeuArgGlnTyrAspIleSerAspProGlnArgProArgLeuThr 25070 : TGGCTGCACGGGGACCTGCGGCAGTATGACATCTCTGACCCGCAAAGGCCCCGCCTCACG : 25011 389 : GlyGln >>>> Target Intron 1 >>>> LeuPheLeuGlyGlySerIleValL : 399 |||||| 253 bp ||||||||||||||||||||||||| GlyGln++ ++LeuPheLeuGlyGlySerIleValL 25010 : GGACAGgt.........................agCTCTTCCTTGGGGGCAGCATTGTTA : 24725 400 : ysGlyGlyProValGlnValLeuGluAspGluGluLeuLysSerGlnProGluProLeuV : 419 |||||||||||||||||||||||||||||:!!|||||||||||||||||||||||||||| ysGlyGlyProValGlnValLeuGluAspGlnGluLeuLysSerGlnProGluProLeuV 24724 : AGGGAGGGCCCGTGCAAGTGTTGGAGGACCAGGAGCTAAAATCCCAGCCAGAGCCCCTGG : 24665 420 : alValLys >>>> Target Intron 2 >>>> GlyLysArgValAlaGlyGlyPr : 429 |||||||| 168 bp |||||||||||| !!|||||||| alValLys++ ++GlyLysArgValProGlyGlyPr 24664 : TGGTCAAGgt.........................agGGGAAACGGGTTCCTGGAGGCCC : 24467 430 : oGlnMetIleGlnLeuSerLeuAspGlyLysArgLeuTyrIleThrThrSerLeuTyrSe : 449 ||||||||||||||||||||||||||||||||||||||||:!!||||||||||||||||| oGlnMetIleGlnLeuSerLeuAspGlyLysArgLeuTyrValThrThrSerLeuTyrSe 24466 : TCAGATGATCCAGCTTAGCCTAGACGGGAAGCGTCTATACGTCACCACATCGCTGTACAG : 24407 450 : rAlaTrpAspLysGlnPheTyrProAspLeuIle{Ar} >>>> Target Intron 3 : 461 ||||||||||||||||||||||||||||||||||{||} 205 bp rAlaTrpAspLysGlnPheTyrProAspLeuIle{Ar}++ 24406 : TGCCTGGGACAAGCAGTTTTACCCTGATCTCATC{AG}gt.................... : 24367 462 : >>>> {g}GluGlySerValMetLeuGlnValAspValAspThrValLysGlyGlyLe : 478 {|}|||||||||||||||||||||:!!||||||||||||:!!||||||||||| ++{g}GluGlySerValMetLeuGlnIleAspValAspThrIleLysGlyGlyLe 24366 : .....ag{G}GAAGGCTCCGTCATGCTGCAGATTGATGTAGACACAATAAAGGGAGGCCT : 24115 479 : uLysLeuAsnProAsnPheLeuValAspPheGlyLysGluProLeuGlyProAlaLeuAl : 498 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| uLysLeuAsnProAsnPheLeuValAspPheGlyLysGluProLeuGlyProAlaLeuAl 24114 : GAAGTTGAACCCCAACTTCCTCGTGGACTTTGGGAAGGAGCCCCTAGGCCCAGCCCTGGC : 24055 499 : aHisGluLeuArgTyrProGlyGlyAspCysSerSerAspIleTrpIle : 514 ||||||||||||||||||||||||||||||||||||||||||||||:!! aHisGluLeuArgTyrProGlyGlyAspCysSerSerAspIleTrpLeu 24054 : CCATGAACTCCGCTACCCTGGGGGTGACTGCAGCTCTGACATTTGGCTC : 24005 vulgar: SPP00002942_2.0 348 514 . KB229087.1:subseq(1475170,25128) 25128 24004 - 844 M 42 126 5 0 2 I 0 249 3 0 2 M 31 93 5 0 2 I 0 164 3 0 2 M 39 117 S 0 2 5 0 2 I 0 201 3 0 2 S 1 1 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-11-25 ##type DNA # # # seqname source feature start end score strand frame attributes # KB229087.1:subseq(1475170,25128) exonerate:protein2genome:local gene 24005 25128 844 - . gene_id 1 ; sequence SPP00002942_2.0 ; gene_orientation + KB229087.1:subseq(1475170,25128) exonerate:protein2genome:local cds 25003 25128 . - . KB229087.1:subseq(1475170,25128) exonerate:protein2genome:local exon 25003 25128 . - . insertions 0 ; deletions 0 KB229087.1:subseq(1475170,25128) exonerate:protein2genome:local splice5 25001 25002 . - . intron_id 1 ; splice_site "GT" KB229087.1:subseq(1475170,25128) exonerate:protein2genome:local intron 24750 25002 . - . intron_id 1 KB229087.1:subseq(1475170,25128) exonerate:protein2genome:local splice3 24750 24751 . - . intron_id 0 ; splice_site "AG" KB229087.1:subseq(1475170,25128) exonerate:protein2genome:local cds 24657 24749 . - . KB229087.1:subseq(1475170,25128) exonerate:protein2genome:local exon 24657 24749 . - . insertions 0 ; deletions 0 KB229087.1:subseq(1475170,25128) exonerate:protein2genome:local splice5 24655 24656 . - . intron_id 2 ; splice_site "GT" KB229087.1:subseq(1475170,25128) exonerate:protein2genome:local intron 24489 24656 . - . intron_id 2 KB229087.1:subseq(1475170,25128) exonerate:protein2genome:local splice3 24489 24490 . - . intron_id 1 ; splice_site "AG" KB229087.1:subseq(1475170,25128) exonerate:protein2genome:local cds 24370 24488 . - . KB229087.1:subseq(1475170,25128) exonerate:protein2genome:local exon 24370 24488 . - . insertions 0 ; deletions 0 KB229087.1:subseq(1475170,25128) exonerate:protein2genome:local splice5 24368 24369 . - . intron_id 3 ; splice_site "GT" KB229087.1:subseq(1475170,25128) exonerate:protein2genome:local intron 24165 24369 . - . intron_id 3 KB229087.1:subseq(1475170,25128) exonerate:protein2genome:local splice3 24165 24166 . - . intron_id 2 ; splice_site "AG" KB229087.1:subseq(1475170,25128) exonerate:protein2genome:local cds 24005 24164 . - . KB229087.1:subseq(1475170,25128) exonerate:protein2genome:local exon 24005 24164 . - . insertions 0 ; deletions 0 KB229087.1:subseq(1475170,25128) exonerate:protein2genome:local similarity 24005 25128 844 - . alignment_id 1 ; Query SPP00002942_2.0 ; Align 25129 349 126 ; Align 24750 391 93 ; Align 24489 422 117 ; Align 24164 462 159 # --- END OF GFF DUMP --- # -- completed exonerate analysis