Command line: [exonerate -m p2g --showtargetgff -q SECp43n/SECp43n_U.fa -t SECp43n/SUBSEQ/KB229508.1_0_subseq.txt --exhaustive yes]
Hostname: [luke]

C4 Alignment:
------------
         Query: SECp43n
        Target: KB229508.1:subseq(359330,25326) Odobenus rosmarus divergens isolate Ivan unplaced genomic scaffold Scaffold631, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 737
   Query range: 75 -> 287
  Target range: 25326 -> 24703

    76 : AlaLysArgPheLysLeuAsnTyrAlaThrTyrGlyLysGlnProAspAsnSerProGlu :    95
         ||||||||||||||||||||||||||||||! !|||||||||||||||||||||||||||
         AlaLysArgPheLysLeuAsnTyrAlaThrSerGlyLysGlnProAspAsnSerProGlu
 25326 : GCAAAACGTTTTAAACTGAATTATGCCACTTCTGGGAAACAACCAGATAACAGCCCTGAG : 25269

    96 : TyrSerLeuPheValGlyAspLeuThrProAspValAspAspGlyMetLeuTyrGluPhe :   115
         |||! !||||||||||||||||||||||||||||||||||||! !|||||||||||||||
         TyrPheLeuPheValGlyAspLeuThrProAspValAspAspAspMetLeuTyrGluPhe
 25268 : TATTTCCTCTTTGTGGGGGACCTGACCCCCGATGTGGATGACGACATGCTGTATGAATTC : 25209

   116 : PheValLysValTyrProSerCysArgGlyGlyLysValValLeuAspGlnThrGlyVal :   135
         |||||||||||||||||||||! !  !||||||||||||:!!|||||| !!|||||||||
         PheValLysValTyrProSerTyr***GlyGlyLysValIleLeuAsp***ThrGlyVal
 25208 : TTCGTCAAAGTCTACCCTTCCTATTAGGGAGGCAAGGTGATTTTGGACTAAACAGGTGTG : 25149

   136 : SerLysGlyTyrGlyPheValLysPheThrAspGluLeuGluGlnLysArgAlaLeuThr :   155
         |||!!.! !|||!.!|||||||||.!!||||||||||||||||||||| !!|||||||||
         SerAsnAspTyrAlaPheValLysIleThrAspGluLeuGluGlnLys***AlaLeuThr
 25148 : TCTAACGACTATGCTTTTGTGAAAATCACAGATGAACTGGAACAGAAGTGAGCCCTGACT : 25089

   156 : GluCysGlnGlyAlaValGlyLeuGlySerLysProValArgLeuSerValAlaIlePro :   175
         !!:|||||||||||||||.!!|||||| !!!  ||||||!:!|||!:!|||||||||! !
         AspCysGlnGlyAlaValSerLeuGlyProThrProValGlnLeuAsnValAlaIleLeu
 25088 : GACTGCCAAGGAGCAGTCAGCCTGGGGCCTACCCCAGTGCAGCTGAATGTGGCAATCCTC : 25029

   176 : LysAlaSerArgValLysProValGluTyr-----SerGlnMetTyrSerTyrSerTyrA :   194
         |||||||||!:!:!!! ! !!|||||||||#####||||||||||||!:!||||||||||
         LysAlaSerGlnMetMetSerValGluTyr#####SerGlnMetTyrAsnTyrSerTyrA
 25028 : AAAGCAAGCCAAATGATGTCAGTGGAGTATAGTCAAGTCAGATGTACAATTACAGCTACA : 24967

   195 : snGlnTyrTyrGlnGlnTyrGlnAsnTyrTyrAlaGlnTrpGlyTyrAspGlnAsnThrG :   214
         ||!!.||||||||| !!:!!|||||||||||||||||||||      |||||||||||||
         snHisTyrTyrGln***HisGlnAsnTyrTyrAlaGlnTrp------AspGlnAsnThrG
 24966 : ACCACTATTACCAGTAGCACCAGAACTACTATGCCCAGTGG------GACCAGAATACAG : 24913

   215 : lySerTyrSerTyrSerTyrProGlnTyrGlyTyrThrGlnSerThrMetGlnThrTyrG :   234
         |||||||||||!:!|||||||||! !|||||||||||||||||||||||| !!! !||||
         lySerTyrSerPheSerTyrProLeuTyrGlyTyrThrGlnSerThrMet***ArgTyrG
 24912 : GCAGCTACAGCTTCAGCTATCCCCTGTATGGTTATACCCAGAGCACTATGTAGAGATATG : 24853

   235 : luGluValGlyAspAspAlaLeuGluAspProMetProGlnLeuAspValThrGluAlaA :   254
         ||:!!||| !!|||            :!!||||||||||||:!!||||||! !|||||||
         luLysValArgAsp------------AsnProMetProGlnIleAspValIleGluAlaA
 24852 : AAAAAGTTAGGGAT------------AACCCCATGCCACAGATAGATGTGATTGAAGCCA : 24805

   255 : snLysGluPheMetGluGlnSerGluGluLeuTyrAspAlaLeuMetAspCysHisTrpG :   274
         ||:!!|||||||||||||||!!!:!!||||||!! ||||||||||||!!:||||||||||
         snGluGluPheMetGluGlnArgLysGluLeu***AspAlaLeuMetGluCysHisTrpG
 24804 : ACGAGGAGTTCATGGAGCAAAGAAAAGAGCTGTAGGATGCACTGATGGAATGTCACTGGC : 24745

   275 : lnProLeuAspThrValSerSerGluIleProAlaMetMet :   287
         ||! !||||||! !||||||||||||! !|||.!!! !|||
         lnLeuLeuAspMetValSerSerGluThrProThrThrMet
 24744 : AACTGCTGGACATGGTATCTTCAGAGACCCCTACCACGATG : 24704

vulgar: SECp43n 75 287 . KB229508.1:subseq(359330,25326) 25326 24703 - 737 M 110 330 F 0 5 M 22 66 G 2 0 M 29 87 G 4 0 M 45 135
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2015-11-25
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
KB229508.1:subseq(359330,25326)	exonerate:protein2genome:local	gene	24704	25326	737	-	.	gene_id 1 ; sequence SECp43n ; gene_orientation .
KB229508.1:subseq(359330,25326)	exonerate:protein2genome:local	cds	24704	25326	.	-	.	
KB229508.1:subseq(359330,25326)	exonerate:protein2genome:local	exon	24704	25326	.	-	.	insertions 0 ; deletions 6 ; frameshifts 5
KB229508.1:subseq(359330,25326)	exonerate:protein2genome:local	similarity	24704	25326	737	-	.	alignment_id 1 ; Query SECp43n ; Align 25327 76 330 ; Align 24992 186 66 ; Align 24926 210 87 ; Align 24839 243 135
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis