Command line: [exonerate -m p2g --showtargetgff -q PSTKn/PSTKn_U.fa -t PSTKn/SUBSEQ/KB230089.1_0_subseq.txt --exhaustive yes] Hostname: [luke] C4 Alignment: ------------ Query: SPP00000052_2.0 # Protein # Phosphoseryl-tRNA kinase (PSTK) # Human (Homo sapiens) Target: KB230089.1:subseq(696258,25290) Odobenus rosmarus divergens isolate Ivan unplaced genomic scaffold Scaffold1212, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 999 Query range: 72 -> 307 Target range: 25290 -> 20735 73 : ProSerGlnTrpLysLeuLeuArgGlnGluLeuLeuLysTyrLeuGluTyrPheLeuMet : 92 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ProSerGlnTrpLysLeuLeuArgGlnGluLeuLeuLysTyrLeuGluTyrPheLeuMet 25290 : CCATCCCAATGGAAGTTGCTTCGACAGGAACTGTTGAAGTACCTAGAATACTTCTTGATG : 25233 93 : AlaValIleAsnGlyCysGlnMetSerValProProAsnArgThrGluAlaMetTrpGlu : 112 |||||||||||||||||||||||||||!.!|||||||||||||||! !|||:!!|||||| AlaValIleAsnGlyCysGlnMetSerAlaProProAsnArgThrAlaAlaLeuTrpGlu 25232 : GCTGTCATTAACGGGTGTCAGATGTCTGCCCCACCCAACAGGACTGCAGCCCTGTGGGAG : 25173 113 : AspPheIleThrCysLeuLysAspGlnAspLeuIlePheSerAlaAlaPheGluAlaGln : 132 |||||||||!:!||||||||||||||||||||||||! !|||||||||.!.|||.!!||| AspPheIleSerCysLeuLysAspGlnAspLeuIleSerSerAlaAlaLeuGluThrGln 25172 : GATTTTATAAGCTGCTTAAAGGATCAAGATCTGATATCTTCTGCTGCGCTGGAGACCCAG : 25113 133 : SerCysTyrLeuLeuThrLysThrAlaValSerArgProLeuPheLeuValLeuAspAsp : 152 |||||||||||||||||||||! !:!!|||||||||||||||||||||:!!||||||||| SerCysTyrLeuLeuThrLysIleSerValSerArgProLeuPheLeuIleLeuAspAsp 25112 : TCTTGCTACCTCTTAACGAAGATTTCTGTTTCTAGACCTTTGTTTTTGATCTTAGATGAC : 25053 153 : AsnPheTyrTyrGlnSerMetArgTyrGluValTyrGlnLeuAlaArgLys{T} >>>> : 170 |||||||||||||||||||||||||||||||||||||||||||||||||||{|} AsnPheTyrTyrGlnSerMetArgTyrGluValTyrGlnLeuAlaArgLys{T}++ 25052 : AACTTTTATTATCAAAGTATGAGATACGAAGTCTACCAACTGGCTCGGAAA{T}gt.... : 24996 171 : Target Intron 1 >>>> {yr}SerLeuGlyPheCysGlnLeuPheLeuAspCys : 181 241 bp {||}||||||||||||||||||||||||||||||||| ++{yr}SerLeuGlyPheCysGlnLeuPheLeuAspCys 24995 : .....................ag{AT}TCATTAGGCTTTTGCCAGCTTTTTTTAGATTGT : 24725 182 : ProLeuGluThrCysLeuGlnArgAsnGlyGlnArgProGlnAlaLeuProProGluThr : 201 ||||||||||||||||||||||||||||||!:!||| !!:!||||||||| !!|||||| ProLeuGluThrCysLeuGlnArgAsnGlyArgArgCysArgAlaLeuProAlaGluThr 24724 : CCTCTCGAGACCTGTTTACAGAGGAATGGCCGGAGATGCCGGGCACTGCCTGCCGAGACC : 24665 202 : IleHisLeuMetGlyArgLysLeuGluLysProAsnProGluLysAsnAlaTrpGluHis : 221 ||||||||||||!.!||||||:!!|||||||||||||||! !|||||||||||||||||| IleHisLeuMetAlaArgLysIleGluLysProAsnProGlyLysAsnAlaTrpGluHis 24664 : ATTCACCTGATGGCAAGAAAGATAGAGAAGCCCAACCCTGGGAAAAATGCCTGGGAACAC : 24605 222 : AsnSerLeuThrIleProSerProAlaCysAlaSerGluAla{Se} >>>> Target : 236 |||||||||||||||! !||| !! !!|||:!!|||||||||{||} 274 AsnSerLeuThrIleGlnSerThrProCysSerSerGluAla{Se}++ 24604 : AACAGCCTCACAATTCAGAGTACGCCATGCTCTTCTGAAGCC{AG}gt............ : 24556 237 : Intron 2 >>>> {r}LeuGluValThrAspLeuLeuLeuThrAlaLeuGluAsnPro : 250 5 bp {|}|||:!!:!!||||||||||||||||||||||||||||||||| ++{r}LeuLysLeuThrAspLeuLeuLeuThrAlaLeuGluAsnPro 24555 : .............ag{C}CTGAAGTTGACTGATTTATTGCTTACTGCTTTGGAAAATCCA : 21773 251 : ValLysTyrAlaGluAspAsnMetGluGlnLys >>>> Target Intron 3 >>>> : 262 ||||||||| !|||||||||:!!||||||||| 496 bp ValLysTyrIleGluAspAsnValGluGlnLys++ 21772 : GTAAAATATATTGAGGACAATGTGGAACAAAAGgt......................... : 21735 263 : AspThrAspArgIleIleCysSerThrAsnIleLeuHisLysThrAspGlnThrLeuA : 281 !!:|||||||||||||||||||||||||||:!!||||||:!!.!!||||||||||||| ++GluThrAspArgIleIleCysSerThrAsnValLeuHisGlnAlaAspGlnThrLeuA 21734 : agGAAACAGACAGAATTATTTGTTCAACTAACGTTCTGCATCAAGCTGACCAGACGCTCC : 21184 282 : rgArgIleValSerGlnThrMetLysGluAlaLys{G} >>>> Target Intron 4 : 293 |||||||||||||||||||||||||||||||||||{!} 368 bp rgArgIleValSerGlnThrMetLysGluAlaLys{A}++ 21183 : GAAGGATTGTCTCTCAGACGATGAAGGAAGCAAAA{G}gt.................... : 21145 294 : >>>> {ly}AsnGlnGluAlaPheSerGluMetThrPheLysGlnArgTrp : 307 { !}!:!! !|||!.!||||||! !||||||||||||! !|||!:: -+{sp}SerLeuGluGlyPheSerAlaMetThrPheLysProArgTyr 21144 : .....gg{AT}AGTCTGGAAGGCTTCTCAGCGATGACATTTAAGCCGAGATAT : 20736 vulgar: SPP00000052_2.0 72 307 . KB230089.1:subseq(696258,25290) 25290 20735 - 999 M 97 291 S 0 1 5 0 2 I 0 237 3 0 2 S 1 2 M 65 195 S 0 2 5 0 2 I 0 2741 3 0 2 S 1 1 M 25 75 5 0 2 I 0 492 3 0 2 M 31 93 S 0 1 5 0 2 I 0 364 3 0 2 S 1 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-11-25 ##type DNA # # # seqname source feature start end score strand frame attributes # KB230089.1:subseq(696258,25290) exonerate:protein2genome:local gene 20736 25290 999 - . gene_id 1 ; sequence SPP00000052_2.0 ; gene_orientation + KB230089.1:subseq(696258,25290) exonerate:protein2genome:local cds 24999 25290 . - . KB230089.1:subseq(696258,25290) exonerate:protein2genome:local exon 24999 25290 . - . insertions 0 ; deletions 0 KB230089.1:subseq(696258,25290) exonerate:protein2genome:local splice5 24997 24998 . - . intron_id 1 ; splice_site "gt" KB230089.1:subseq(696258,25290) exonerate:protein2genome:local intron 24758 24998 . - . intron_id 1 KB230089.1:subseq(696258,25290) exonerate:protein2genome:local splice3 24758 24759 . - . intron_id 0 ; splice_site "AG" KB230089.1:subseq(696258,25290) exonerate:protein2genome:local cds 24559 24757 . - . KB230089.1:subseq(696258,25290) exonerate:protein2genome:local exon 24559 24757 . - . insertions 0 ; deletions 0 KB230089.1:subseq(696258,25290) exonerate:protein2genome:local splice5 24557 24558 . - . intron_id 2 ; splice_site "GT" KB230089.1:subseq(696258,25290) exonerate:protein2genome:local intron 21814 24558 . - . intron_id 2 KB230089.1:subseq(696258,25290) exonerate:protein2genome:local splice3 21814 21815 . - . intron_id 1 ; splice_site "AG" KB230089.1:subseq(696258,25290) exonerate:protein2genome:local cds 21738 21813 . - . KB230089.1:subseq(696258,25290) exonerate:protein2genome:local exon 21738 21813 . - . insertions 0 ; deletions 0 KB230089.1:subseq(696258,25290) exonerate:protein2genome:local splice5 21736 21737 . - . intron_id 3 ; splice_site "GT" KB230089.1:subseq(696258,25290) exonerate:protein2genome:local intron 21242 21737 . - . intron_id 3 KB230089.1:subseq(696258,25290) exonerate:protein2genome:local splice3 21242 21243 . - . intron_id 2 ; splice_site "AG" KB230089.1:subseq(696258,25290) exonerate:protein2genome:local cds 21148 21241 . - . KB230089.1:subseq(696258,25290) exonerate:protein2genome:local exon 21148 21241 . - . insertions 0 ; deletions 0 KB230089.1:subseq(696258,25290) exonerate:protein2genome:local splice5 21146 21147 . - . intron_id 4 ; splice_site "GT" KB230089.1:subseq(696258,25290) exonerate:protein2genome:local intron 20780 21147 . - . intron_id 4 KB230089.1:subseq(696258,25290) exonerate:protein2genome:local splice3 20780 20781 . - . intron_id 3 ; splice_site "GG" KB230089.1:subseq(696258,25290) exonerate:protein2genome:local cds 20736 20779 . - . KB230089.1:subseq(696258,25290) exonerate:protein2genome:local exon 20736 20779 . - . insertions 0 ; deletions 0 KB230089.1:subseq(696258,25290) exonerate:protein2genome:local similarity 20736 25290 999 - . alignment_id 1 ; Query SPP00000052_2.0 ; Align 25291 73 291 ; Align 24756 171 195 ; Align 21813 237 75 ; Align 21242 262 93 ; Align 20778 294 42 # --- END OF GFF DUMP --- # -- completed exonerate analysis