Command line: [exonerate -m p2g --showtargetgff -q MsrAn/MsrAn_U.fa -t MsrAn/SUBSEQ/KB229723.1_0_subseq.txt --exhaustive yes]
Hostname: [luke]

C4 Alignment:
------------
         Query: SPP00000044_2.0 # Protein # Methionine sulfoxide reductase A (MsrA) # Human (Homo sapiens)
        Target: KB229723.1:subseq(159993,25164) Odobenus rosmarus divergens isolate Ivan unplaced genomic scaffold Scaffold846, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 277
   Query range: 180 -> 235
  Target range: 25164 -> 24999

   181 : LysValLeuSerGluHisGlyPheGlyProIleThrThrAspIleArgGluGlyGlnThr :   200
         :!!||||||||||||||||||!:!|||! !||||||||||||||||||||||||||||||
         GlnValLeuSerGluHisGlyTyrGlyLeuIleThrThrAspIleArgGluGlyGlnThr
 25164 : CAGGTTCTTTCGGAGCACGGCTATGGCCTGATCACGACCGACATCCGGGAGGGCCAAACC : 25107

   201 : PheTyrTyrAlaGluAspTyrHisGlnGlnTyrLeuSerLysAsnProAsnGlyTyrCys :   220
         |||||||||||||||!!:||||||||||||||||||||||||||||||:!!|||||||||
         PheTyrTyrAlaGluGluTyrHisGlnGlnTyrLeuSerLysAsnProAspGlyTyrCys
 25106 : TTCTACTACGCGGAGGAGTACCACCAGCAGTACCTGAGCAAGAACCCCGATGGGTACTGC : 25047

   221 : GlyLeuGlyGlyThrGlyValSerCysProValGlyIleLysLys :   235
         ||||||||||||||||||||||||||||||:!!|||:!!||||||
         GlyLeuGlyGlyThrGlyValSerCysProLeuGlyValLysLys
 25046 : GGCCTCGGGGGCACCGGAGTGTCCTGTCCACTGGGTGTTAAAAAG : 25000

vulgar: SPP00000044_2.0 180 235 . KB229723.1:subseq(159993,25164) 25164 24999 - 277 M 55 165
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2015-11-25
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
KB229723.1:subseq(159993,25164)	exonerate:protein2genome:local	gene	25000	25164	277	-	.	gene_id 1 ; sequence SPP00000044_2.0 ; gene_orientation .
KB229723.1:subseq(159993,25164)	exonerate:protein2genome:local	cds	25000	25164	.	-	.	
KB229723.1:subseq(159993,25164)	exonerate:protein2genome:local	exon	25000	25164	.	-	.	insertions 0 ; deletions 0
KB229723.1:subseq(159993,25164)	exonerate:protein2genome:local	similarity	25000	25164	277	-	.	alignment_id 1 ; Query SPP00000044_2.0 ; Align 25165 181 165
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis