Command line: [exonerate -m p2g --showtargetgff -q GPx8n/GPx8n_U.fa -t GPx8n/SUBSEQ/KB230075.1_0_subseq.txt --exhaustive yes]
Hostname: [luke]

C4 Alignment:
------------
         Query: SPP00000041_2.0 # Protein # Glutathione peroxidase 8 (GPx8) # Human (Homo sapiens)
        Target: KB230075.1:subseq(731863,25263) Odobenus rosmarus divergens isolate Ivan unplaced genomic scaffold Scaffold1198, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 671
   Query range: 67 -> 209
  Target range: 25263 -> 21110

    68 : LysValSerLeuValValAsnValAlaSerAspCysGlnLeuThrAspArgAsnTyrLeu :    87
         :!!|||:!!|||||||||||||||||||||||||||||||||||||||||||||||||||
         GluValAlaLeuValValAsnValAlaSerAspCysGlnLeuThrAspArgAsnTyrLeu
 25263 : GAGGTTGCACTAGTTGTAAACGTGGCTAGTGACTGCCAACTCACAGACAGAAATTACTTA : 25206

    88 : GlyLeuLysGluLeuHisLysGluPheGlyProSerHisPheSerValLeuAlaPhePro :   107
         !.!|||:!!||||||||||||||||||||||||! !||||||||||||||||||||||||
         AlaLeuGlnGluLeuHisLysGluPheGlyProPheHisPheSerValLeuAlaPhePro
 25205 : GCACTGCAGGAACTGCACAAAGAGTTTGGACCATTTCACTTCAGCGTCTTGGCCTTTCCA : 25146

   108 : CysAsnGlnPheGlyGluSerGluProArgProSerLysGluValGluSerPheAlaArg :   127
         |||||||||||||||||||||||||||||||||||||||||||||! !||||||||||||
         CysAsnGlnPheGlyGluSerGluProArgProSerLysGluValValSerPheAlaArg
 25145 : TGCAATCAGTTCGGAGAATCGGAGCCCCGCCCAAGCAAGGAAGTAGTATCTTTTGCAAGA : 25086

   128 : LysAsnTyrGlyValThrPheProIlePheHisLysIleLysIleLeuGlySerGluGly :   147
         !!.||||||||||||||||||||||||||||||||||||||||||||||||||||||!.!
         AsnAsnTyrGlyValThrPheProIlePheHisLysIleLysIleLeuGlySerGluAla
 25085 : AATAACTACGGAGTGACATTCCCCATCTTCCACAAGATTAAGATTCTAGGATCTGAAGCA : 25026

   148 : GluProAlaPheArgPheLeuVal{A}  >>>> Target Intron 1 >>>>  {sp} :   156
         !!:|||||||||||||||||||||{|}           3727 bp           {||}
         AspProAlaPheArgPheLeuVal{A}++                         ++{sp}
 25025 : GACCCTGCATTTAGATTTCTTGTT{G}gt.........................ag{AT} : 21271

   157 : SerSerLysLysGluProArgTrpAsnPheTrpLysTyrLeuValAsnProGluGlyGln :   176
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         SerSerLysLysGluProArgTrpAsnPheTrpLysTyrLeuValAsnProGluGlyGln
 21270 : TCTTCAAAGAAGGAACCGAGGTGGAATTTCTGGAAGTATCTGGTCAACCCTGAGGGCCAA : 21212

   177 : ValValLysPheTrpLysProGluGluProIleGluValIleArgProAspIleAlaAla :   196
         |||||||||   |||:::||||||||||||||||||||||||||||||!!:|||||||||
         ValValLysSerTrpArgProGluGluProIleGluValIleArgProGluIleAlaAla
 21211 : GTTGTGaagtcctggaggccagaggaaCCCATTGAAGTCATCAGGCCTGAGATAGCAGCT : 21152

   197 : LeuValArgGlnValIleIleLysLysLysGluAspLeu :   209
         |||:!!||||||:!:||||||:::|||||||||||||||
         LeuIleArgGlnMetIleIleArgLysLysGluAspLeu
 21151 : CTGATTAGACAAATgatcataagaaagaaagaggaccTG : 21111

vulgar: SPP00000041_2.0 67 209 . KB230075.1:subseq(731863,25263) 25263 21110 - 671 M 88 264 S 0 1 5 0 2 I 0 3723 3 0 2 S 1 2 M 53 159
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2015-11-25
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
KB230075.1:subseq(731863,25263)	exonerate:protein2genome:local	gene	21111	25263	671	-	.	gene_id 1 ; sequence SPP00000041_2.0 ; gene_orientation +
KB230075.1:subseq(731863,25263)	exonerate:protein2genome:local	cds	24999	25263	.	-	.	
KB230075.1:subseq(731863,25263)	exonerate:protein2genome:local	exon	24999	25263	.	-	.	insertions 0 ; deletions 0
KB230075.1:subseq(731863,25263)	exonerate:protein2genome:local	splice5	24997	24998	.	-	.	intron_id 1 ; splice_site "GT"
KB230075.1:subseq(731863,25263)	exonerate:protein2genome:local	intron	21272	24998	.	-	.	intron_id 1
KB230075.1:subseq(731863,25263)	exonerate:protein2genome:local	splice3	21272	21273	.	-	.	intron_id 0 ; splice_site "AG"
KB230075.1:subseq(731863,25263)	exonerate:protein2genome:local	cds	21111	21271	.	-	.	
KB230075.1:subseq(731863,25263)	exonerate:protein2genome:local	exon	21111	21271	.	-	.	insertions 0 ; deletions 0
KB230075.1:subseq(731863,25263)	exonerate:protein2genome:local	similarity	21111	25263	671	-	.	alignment_id 1 ; Query SPP00000041_2.0 ; Align 25264 68 264 ; Align 21270 157 159
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis