Command line: [exonerate -m p2g --showtargetgff -q GPx6/GPx6_U.fa -t GPx6/SUBSEQ/KB229423.1_1_subseq.txt --exhaustive yes] Hostname: [luke] C4 Alignment: ------------ Query: GPx6 Target: KB229423.1:subseq(776662,25203) Odobenus rosmarus divergens isolate Ivan unplaced genomic scaffold Scaffold546, whole genome shotgun sequence Model: protein2genome:local Raw score: 914 Query range: 0 -> 220 Target range: 15312 -> 25203 1 : MetPheGlnGlnPheGlnAlaSerCysLeuValLeuPhePheLeuValGlyPheAlaGln : 20 |||.!!||||||.!! !||||||!! ||| !!! !.!.||||||!.!|||.!!|||||| MetLeuGlnGlnLeuTrpAlaSerTrpLeuPheProLeuPheLeuAlaGlyLeuAlaGln 15313 : ATGCTCCAGCAGCTCTGGGCGTCGTGGCTTTTCCCACTGTTCCTGGCCGGCCTCGCCCAG : 15370 21 : GlnThrLeuLysProGln >>>> Target Intron 1 >>>> AsnArgLys >> : 30 ! !|||! !||| !:!! 3018 bp ||| !:!! ProThrGlnLysMetLys++ ++AsnPheGlu++ 15371 : CCGACCCAGAAGATGAAGgt.........................agAATTTCGAGgt.. : 18420 31 : >> Target Intron 2 >>>> ValAspCysAsnLysGlyValThrGlyThrIleTy : 41 101 bp :!!|||||| !!||||||||||||||||||||||| ++MetAspCysTyrLysGlyValThrGlyThrIleTy 18421 : .......................agATGGATTGCTACAAGGGGGTGACGGGCACCATCTA : 18552 42 : rGluTyrGlyAlaLeuThrLeuAsnGlyGluGluTyrIleGlnPheLysGlnPheAlaGl : 61 ||||||||||||||||!:!||||||! !||||||:!!|||! !||||||!:!!:!||||| rGluTyrGlyAlaLeuSerLeuAsnGluGluGluHisIleProPheLysArgTyrAlaGl 18553 : TGAGTATGGAGCCCTCAGCCTCAATGAAGAGGAGCACATTCCGTTCAAGCGGTACGCGGG : 18612 62 : yLysHisValLeuPheValAsnValAlaAlaTyrUnkGlyLeuAlaAlaGlnTyrPro{G : 81 ||||||||||||||||||||||||||||.!!||| ||||||.!!||||||||||||{| yLysHisValLeuPheValAsnValAlaThrTyrCysGlyLeuThrAlaGlnTyrPro{G 18613 : CAAGCACGTCCTCTTTGTCAACGTGGCTACCTACTGTGGCCTGACAGCTCAGTACCCC{G : 18672 82 : } >>>> Target Intron 3 >>>> {lu}LeuAsnAlaLeuGlnGluGluLeuLy : 90 } 4456 bp {||}|||||||||||||||!!:|||||||| }++ ++{lu}LeuAsnAlaLeuGlnAspGluLeuLy 18673 : }gt.........................ag{AA}CTGAATGCACTGCAGGACGAGCTGAA : 23155 91 : sAsnPheGlyValIleValLeuAlaPheProCysAsnGlnPheGlyLysGlnGluProGl : 110 | !! !||||||:!!||||||!.!||||||||||||||||||||||||||||||||||| sProSerGlyValValValLeuGlyPheProCysAsnGlnPheGlyLysGlnGluProGl 23156 : GCCTTCTGGTGTCGTCGTGCTGGGCTTTCCCTGCAACCAGTTTGGAAAACAAGAACCAGG : 23215 111 : yThrAsnSerGluIleLeuLeuGlyLeu{Ly} >>>> Target Intron 4 >>>> : 120 |! !|||||||||||||||! !||||||{||} 476 bp yLysAsnSerGluIleLeuSerGlyLeu{Ly}++ + 23216 : AAAGAACTCAGAGATCCTTTCTGGGCTC{AA}gt.........................a : 23721 121 : {s}TyrValCysProGlySerGlyPheValProSerPheGlnLeuPheGluLysGlyAs : 139 {|}|||||| !!||||||.!!||||||||||||!:!||||||||||||||||||||||| +{s}TyrValArgProGlyGlyGlyPheValProAsnPheGlnLeuPheGluLysGlyAs 23722 : g{G}TATGTGCGTCCGGGTGGTGGCTTTGTCCCCAATTTTCAGCTCTTTGAGAAAGGGGA : 23778 140 : pValAsnGlyGluLysGluGlnLysValPheThrPheLeuLys >>>> Target Int : 154 ||||||||||||||||||||||||||||||||||||||||||| 1180 b pValAsnGlyGluLysGluGlnLysValPheThrPheLeuLys++ 23779 : TGtgaatggagaaaaagaacagaaggtCTTTACCTTCCTGAAGgt............... : 23825 155 : ron 5 >>>> AsnSerCysProProThrSerAspLeuLeuGlySerSerSerGlnLeu : 169 p ||||||||||||||||||||||||||||||||||||:!!||||||||| ++AsnSerCysProProThrSerAspLeuLeuGlySerAlaSerGlnLeu 23826 : ..........agaACTCCTGCCCTCCAACCTCTGATCTTTTGGGCTCAGCAAGCCAACTC : 25048 170 : PheTrpGluProMetLysValHisAspIleArgTrpAsnPheGluLysPheLeuValGly : 189 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| PheTrpGluProMetLysValHisAspIleArgTrpAsnPheGluLysPheLeuValGly 25049 : TTCTGGGAGCCCATGAAGGTCCACGACATCCGCTGGAACTTTGAGAAGTTCCTGGTGGGG : 25108 190 : ProAspGlyValProValMetHisTrpPheHisGlnAlaProValSerThrValLysSer : 209 |||||||||||||||||||||!.!|||||||||:!!||||||:!!||||||||||||||| ProAspGlyValProValMetArgTrpPheHisLysAlaProIleSerThrValLysSer 25109 : CCTGATGGAGTCCCTGTCATGCGCTGGTTCCACAAGGCTCCCATCAGCACGGTCAAGTCA : 25168 210 : AspIleLeuGluTyrLeuLysGlnPheAsnThr : 220 ||||||||||||||||||||||||! !!!.||| AspIleLeuGluTyrLeuLysGlnSerLysThr 25169 : GACATCCTGGAGTACCTGAAACAGTCCAAAACC : 25203 vulgar: 0 220 . KB229423.1:subseq(776662,25203) 15312 25203 + 914 M 26 78 5 0 2 I 0 3014 3 0 2 M 3 9 5 0 2 I 0 97 3 0 2 M 51 153 S 0 1 5 0 2 I 0 4452 3 0 2 S 1 2 M 38 114 S 0 2 5 0 2 I 0 472 3 0 2 S 1 1 M 33 99 5 0 2 I 0 1176 3 0 2 M 67 201 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-11-25 ##type DNA # # # seqname source feature start end score strand frame attributes # KB229423.1:subseq(776662,25203) exonerate:protein2genome:local gene 15313 25203 914 + . gene_id 1 ; sequence ; gene_orientation + KB229423.1:subseq(776662,25203) exonerate:protein2genome:local cds 15313 15390 . + . KB229423.1:subseq(776662,25203) exonerate:protein2genome:local exon 15313 15390 . + . insertions 0 ; deletions 0 KB229423.1:subseq(776662,25203) exonerate:protein2genome:local splice5 15391 15392 . + . intron_id 1 ; splice_site "GT" KB229423.1:subseq(776662,25203) exonerate:protein2genome:local intron 15391 18408 . + . intron_id 1 KB229423.1:subseq(776662,25203) exonerate:protein2genome:local splice3 18407 18408 . + . intron_id 0 ; splice_site "AG" KB229423.1:subseq(776662,25203) exonerate:protein2genome:local cds 18409 18417 . + . KB229423.1:subseq(776662,25203) exonerate:protein2genome:local exon 18409 18417 . + . insertions 0 ; deletions 0 KB229423.1:subseq(776662,25203) exonerate:protein2genome:local splice5 18418 18419 . + . intron_id 2 ; splice_site "GT" KB229423.1:subseq(776662,25203) exonerate:protein2genome:local intron 18418 18518 . + . intron_id 2 KB229423.1:subseq(776662,25203) exonerate:protein2genome:local splice3 18517 18518 . + . intron_id 1 ; splice_site "AG" KB229423.1:subseq(776662,25203) exonerate:protein2genome:local cds 18519 18672 . + . KB229423.1:subseq(776662,25203) exonerate:protein2genome:local exon 18519 18672 . + . insertions 0 ; deletions 0 KB229423.1:subseq(776662,25203) exonerate:protein2genome:local splice5 18673 18674 . + . intron_id 3 ; splice_site "GT" KB229423.1:subseq(776662,25203) exonerate:protein2genome:local intron 18673 23128 . + . intron_id 3 KB229423.1:subseq(776662,25203) exonerate:protein2genome:local splice3 23127 23128 . + . intron_id 2 ; splice_site "AG" KB229423.1:subseq(776662,25203) exonerate:protein2genome:local cds 23129 23246 . + . KB229423.1:subseq(776662,25203) exonerate:protein2genome:local exon 23129 23246 . + . insertions 0 ; deletions 0 KB229423.1:subseq(776662,25203) exonerate:protein2genome:local splice5 23247 23248 . + . intron_id 4 ; splice_site "GT" KB229423.1:subseq(776662,25203) exonerate:protein2genome:local intron 23247 23722 . + . intron_id 4 KB229423.1:subseq(776662,25203) exonerate:protein2genome:local splice3 23721 23722 . + . intron_id 3 ; splice_site "AG" KB229423.1:subseq(776662,25203) exonerate:protein2genome:local cds 23723 23822 . + . KB229423.1:subseq(776662,25203) exonerate:protein2genome:local exon 23723 23822 . + . insertions 0 ; deletions 0 KB229423.1:subseq(776662,25203) exonerate:protein2genome:local splice5 23823 23824 . + . intron_id 5 ; splice_site "GT" KB229423.1:subseq(776662,25203) exonerate:protein2genome:local intron 23823 25002 . + . intron_id 5 KB229423.1:subseq(776662,25203) exonerate:protein2genome:local splice3 25001 25002 . + . intron_id 4 ; splice_site "ag" KB229423.1:subseq(776662,25203) exonerate:protein2genome:local cds 25003 25203 . + . KB229423.1:subseq(776662,25203) exonerate:protein2genome:local exon 25003 25203 . + . insertions 0 ; deletions 0 KB229423.1:subseq(776662,25203) exonerate:protein2genome:local similarity 15313 25203 914 + . alignment_id 1 ; Query ; Align 15313 1 78 ; Align 18409 27 9 ; Align 18519 30 153 ; Align 23131 82 114 ; Align 23724 121 99 ; Align 25003 154 201 # --- END OF GFF DUMP --- # -- completed exonerate analysis