Command line: [exonerate -m p2g --showtargetgff -q GPx2/GPx2_U.fa -t GPx2/SUBSEQ/KB229305.1_1_subseq.txt --exhaustive yes]
Hostname: [luke]

C4 Alignment:
------------
         Query:  GPx2
        Target: KB229305.1:subseq(2002962,25221) Odobenus rosmarus divergens isolate Ivan unplaced genomic scaffold Scaffold428, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 995
   Query range: 0 -> 190
  Target range: 25221 -> 22323

     1 : MetAlaPheIleAlaLysSerPheTyrAspLeuSerAlaIleSerLeuAspGlyGluLys :    20
         ||||||!:!|||||||||||||||||||||||||||||||||||||||||||||||||||
         MetAlaTyrIleAlaLysSerPheTyrAspLeuSerAlaIleSerLeuAspGlyGluLys
 25221 : ATGGCTTACATAGCCAAGTCCTTCTACGACCTCAGTGCCATCAGCCTGGACGGGGAGAAG : 25164

    21 : ValAspPheAsnThrPheArgGlyArgAlaValLeuIleGluAsnValAlaSerLeuUnk :    40
         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   
         ValAspPheAsnThrPheArgGlyArgAlaValLeuIleGluAsnValAlaSerLeu***
 25163 : GTAGATTTCAACACGTTCCGAGGCAGGGCCGTGCTGATTGAGAACGTGGCCTCGCTCTGA : 25104

    41 : GlyThrThrThrArgAspPheThrGlnLeuAsnGluLeuGlnCysArgPheProArgArg :    60
         |||||||||!:!||||||||||||||||||||||||||||||||||||||||||||||||
         GlyThrThrSerArgAspPheThrGlnLeuAsnGluLeuGlnCysArgPheProArgArg
 25103 : GGCACGACCAGCCGGGACTTCACCCAGCTCAACGAGCTGCAATGCCGCTTTCCCAGGCGC : 25044

    61 : LeuValValLeuGlyPheProCysAsnGlnPheGlyHisGln  >>>> Target Intr :    75
         ||||||||||||||||||||||||||||||||||||||||||           2328 bp
         LeuValValLeuGlyPheProCysAsnGlnPheGlyHisGln++                
 25043 : CTGGTGGTTCTTGGCTTCCCTTGCAACCAATTTGGACATCAGgt................ : 24997

    76 : on 1 >>>>  GluAsnCysGlnAsnGluGluIleLeuAsnSerLeuLysTyrValArgP :    91
                    |||||||||||||||||||||||||||||||||||||||||||||||||
                  ++GluAsnCysGlnAsnGluGluIleLeuAsnSerLeuLysTyrValArgP
 24996 : .........aggagaacTGTCAGAATGAGGAGATCCTGAACAGTCTCAAGTATGTCCGCC : 22623

    92 : roGlyGlyGlyTyrGlnProThrPheThrLeuValGlnLysCysGluValAsnGlyGlnA :   111
         |||||||||||!:!||||||||||||||||||||||||||||||||||||||||||||||
         roGlyGlyGlyPheGlnProThrPheThrLeuValGlnLysCysGluValAsnGlyGlnA
 22622 : CTGGGGGTGGATTCCAGCCCACCTTTACCCTTGTCCAAAAGTGTGAGGTGAATGGTCAGA : 22563

   112 : snGluHisProValPheAlaTyrLeuLysAspLysLeuProTyrProTyrAspAspProP :   131
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         snGluHisProValPheAlaTyrLeuLysAspLysLeuProTyrProTyrAspAspProP
 22562 : ACGAGCATCCTGTCTTCGCCTACCTGAAGGACAAGCTCCCCTACCCTTACGATGACCCAT : 22503

   132 : heSerLeuMetThrAspProLysLeuIleIleTrpSerProValArgArgSerAspValA :   151
         |||||||||||||||||||||||!!!||||||||||||||||||||||||||||||||||
         heSerLeuMetThrAspProLysPheIleIleTrpSerProValArgArgSerAspValA
 22502 : TTTCCCTCATGACCGATCCCAAGTTCATCATTTGGAGCCCGGTGCGCCGCTCAGATGTGG : 22443

   152 : laTrpAsnPheGluLysPheLeuIleGlyProGluGlyGluProPheArgArgTyrSerA :   171
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         laTrpAsnPheGluLysPheLeuIleGlyProGluGlyGluProPheArgArgTyrSerA
 22442 : CCTGGAACTTTGAGAAGTTCCTTATTGGGCCGGAGGGAGAGCCCTTCCGCCGCTACAGCC : 22383

   172 : rgThrPheProThrIleAsnIleGluProAspIleLysArgLeuLeuLysValAlaIle :   190
         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         rgThrPheProThrIleAsnIleGluProAspIleLysArgLeuLeuLysValAlaIle
 22382 : GCACCTTCCCTACCATCAACATTGAGCCTGACATCAAACGCCTCCTCAAAGTTGCCATA : 22324

vulgar:  0 190 . KB229305.1:subseq(2002962,25221) 25221 22323 - 995 M 74 222 5 0 2 I 0 2324 3 0 2 M 116 348
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2015-11-25
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
KB229305.1:subseq(2002962,25221)	exonerate:protein2genome:local	gene	22324	25221	995	-	.	gene_id 1 ; sequence  ; gene_orientation +
KB229305.1:subseq(2002962,25221)	exonerate:protein2genome:local	cds	25000	25221	.	-	.	
KB229305.1:subseq(2002962,25221)	exonerate:protein2genome:local	exon	25000	25221	.	-	.	insertions 0 ; deletions 0
KB229305.1:subseq(2002962,25221)	exonerate:protein2genome:local	splice5	24998	24999	.	-	.	intron_id 1 ; splice_site "GT"
KB229305.1:subseq(2002962,25221)	exonerate:protein2genome:local	intron	22672	24999	.	-	.	intron_id 1
KB229305.1:subseq(2002962,25221)	exonerate:protein2genome:local	splice3	22672	22673	.	-	.	intron_id 0 ; splice_site "ag"
KB229305.1:subseq(2002962,25221)	exonerate:protein2genome:local	cds	22324	22671	.	-	.	
KB229305.1:subseq(2002962,25221)	exonerate:protein2genome:local	exon	22324	22671	.	-	.	insertions 0 ; deletions 0
KB229305.1:subseq(2002962,25221)	exonerate:protein2genome:local	similarity	22324	25221	995	-	.	alignment_id 1 ; Query  ; Align 25222 1 222 ; Align 22672 75 348
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis