Command line: [exonerate -m p2g --showtargetgff -q DI2/DI2_U.fa -t DI2/SUBSEQ/KB229801.1_1_subseq.txt --exhaustive yes]
Hostname: [luke]

C4 Alignment:
------------
         Query:  DI2
        Target: KB229801.1:subseq(936022,25245) Odobenus rosmarus divergens isolate Ivan unplaced genomic scaffold Scaffold924, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 1318
   Query range: 0 -> 301
  Target range: 25245 -> 16420

     1 : MetGlyIleLeuSerValAspLeuLeuIleThrLeuGlnIleLeuProValPhePheSer :    20
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         MetGlyIleLeuSerValAspLeuLeuIleThrLeuGlnIleLeuProValPhePheSer
 25245 : ATGGGCATCCTCAGCGTAGACTTGCTGATCACACTGCAAATTCTGCCAGTTTTTTTCTCC : 25188

    21 : AsnCysLeuPheLeuAlaLeuTyrAspSerValIleLeuLeuLysHisValValLeuLeu :    40
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         AsnCysLeuPheLeuAlaLeuTyrAspSerValIleLeuLeuLysHisValValLeuLeu
 25187 : AACTGCCTCTTCCTGGCACTCTATGACTCGGTCATTCTCCTCAAGCACGTGGTGCTGCTG : 25128

    41 : LeuSerArgSerLysSerThrArgGlyGluTrpArgArgMetLeuThrSerGluGlyLeu :    60
         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||:!!
         LeuSerArgSerLysSerThrArgGlyGluTrpArgArgMetLeuThrSerGluGlyMet
 25127 : CTGAGCCGCTCCAAGTCCACTCGCGGGGAGTGGAGGCGCATGCTGACCTCAGAGGGAATG : 25068

    61 : ArgCysValTrpLysSerPheLeuLeuAspAlaTyrLysGln  >>>> Target Intr :    75
         ||||||:!!|||||||||||||||||||||||||||||||||           4954 bp
         ArgCysIleTrpLysSerPheLeuLeuAspAlaTyrLysGln++                
 25067 : CGCTGCATCTGGAAAAGCTTCCTCCTCGATGCCTACAAGCAGgt................ : 25021

    76 : on 1 >>>>  LeuAsnCysProProSerGlyPheSerLysAspGlyHisIleLeuUnkL :    91
                        !   !  !  !||| !!|||!  ::::::|||...   |||   |
                  +-Cys***IleValIleSerArgPhe***GlnAsnGlyGlnAsnLeuLysL
 25020 : .........attgctAAATTGTCATCAGCAGATTTTagcaaaatggacaaaatttaaaat : 20021

    92 : euValTyrGluAlaTyrLysSerArgLeuLeuValTyrSerHisLeuAspLeuTrpMet  :   111
         ||||| !!|||!.!|||||||||||||||||||||||||||!.!! !|||! !  !!!: 
         euValAspGluValTyrLysSerArgLeuLeuValTyrSerArgTrpAspSerGlnIle-
 20020 : tagttgATGAGGTTTACAAAAGCAGACTACTGGTCTACTCACGTTGGGACTCACAGATaa : 19961

   112 :  >>>> Target Intron 2 >>>>  ValLysLeuGlyGluAspAlaProAsnSerSe :   121
                   2968 bp           ||||||||||||||||||||||||||||||||
         +                         ++ValLysLeuGlyGluAspAlaProAsnSerSe
 19960 : t.........................agGTGAAATTGGGTGAAGATGCCCCCAATTCCAG : 16963

   122 : rValValHisValSerSerThrGluGlyGlyAspAsnSerGlyAsnGlyThrGlnGluLy :   141
         ||||||||||||||||!:!:!!|||||||||||||||||| !!||||||||||||! !||
         rValValHisValSerAsnSerGluGlyGlyAspAsnSerArgAsnGlyThrGlnValLy
 16962 : TGTGGTACATGTCTCCAATTCTGAAGGAGGTGACAACAGTAGAAATGGTACCCAGGTGAA : 16903

   142 : sIleAlaGluGlyAlaThrCysHisLeuLeuAspPheAlaSerProGluArgProLeuVa :   161
         |!!:!.!!!:||||||  !|||||||||||||||||||||||||||||||||||||||||
         sMetValAspGlyAlaGluCysHisLeuLeuAspPheAlaSerProGluArgProLeuVa
 16902 : GATGGTTGATGGAGCCGAGTGCCACCTTCTTGACTTTGCCAGCCCTGAGCGCCCACTGGT : 16843

   162 : lValAsnPheGlySerAlaThrUnkProProPheThrSerGlnLeuProAlaPheArgLy :   181
         ||||||||||||||||||||||   ||||||||||||||||||||||||||||||!!!||
         lValAsnPheGlySerAlaThr***ProProPheThrSerGlnLeuProAlaPheSerLy
 16842 : GGTCAACTTTGGCTCAGCCACTTGACCTCCTTTTACTAGCCAGCTGCCAGCCTTCAGCAA : 16783

   182 : sLeuValGluGluPheSerSerValAlaAspPheLeuLeuValTyrIleAspGluAlaHi :   201
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         sLeuValGluGluPheSerSerValAlaAspPheLeuLeuValTyrIleAspGluAlaHi
 16782 : ACTGGTGGAAGAGTTCTCATCAGTGGCTGACTTCCTGTTGGTCTACATTGATGAGGCTCA : 16723

   202 : sProSerAspGlyTrpAlaIleProGlyAspSerSerLeuSerPheGluValLysLysHi :   221
         |||||||||||||||||||:!:||||||||||||||||||||||||||||||||||||||
         sProSerAspGlyTrpAlaValProGlyAspSerSerLeuSerPheGluValLysLysHi
 16722 : TCCTTCAGATGGTTGGGCAGTGCCTGGTgattcttctttgtcttttgaagTGAAGAAGCA : 16663

   222 : sGlnAsnGlnGluAspArgCysAlaAlaAlaGlnGlnLeuLeuGluArgPheSerLeuPr :   241
         |::!|||||||||||||||||||||||||||!!.||||||||||||||||||||||||||
         sArgAsnGlnGluAspArgCysAlaAlaAlaHisGlnLeuLeuGluArgPheSerLeuPr
 16662 : CAGGAACCAGGAAGACCGATGTGCAGCAGCCCACCAGCTTCTGGAGCGTTTCTCCTTGCC : 16603

   242 : oProGlnCysArgValValAlaAspArgMetAspAsnAsnAlaAsnIleAlaTyrGlyVa :   261
         ||||||||||||||||||||||||||||||||||||||||||||||:!!|||||||||||
         oProGlnCysArgValValAlaAspArgMetAspAsnAsnAlaAsnValAlaTyrGlyVa
 16602 : GCCCCAGTGCCGAGTTGTGGCTGACCGCATGGACAATAATGCCAATGTAGCTTATGGGGT : 16543

   262 : lAlaPheGluArgValCysIleValGlnArgGlnLysIleAlaTyrLeuGlyGlyLysGl :   281
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         lAlaPheGluArgValCysIleValGlnArgGlnLysIleAlaTyrLeuGlyGlyLysGl
 16542 : AGCCTTTGAACGTGTGTGTATTGTGCAGAGACAGAAAATTGCTTATCTGGGAGGAAAGGG : 16483

   282 : yProPheSerTyrAsnLeuGlnGluValArgHisTrpLeuGluLysAsnPheSerLysAr :   301
         |||||||!!!|||||||||||||||||||||!.!||||||||||||||||||||||||||
         yProPheCysTyrAsnLeuGlnGluValArgArgTrpLeuGluLysAsnPheSerLysAr
 16482 : CCCCTTCTGCTACAACCTTCAAGAAGTCCGGCGTTGGCTGGAGAAGAATTTCAGCAAAAG : 16423

   302 : g :   301
         |
         g
 16422 : A : 16421

vulgar:  0 301 . KB229801.1:subseq(936022,25245) 25245 16420 - 1318 M 74 222 5 0 2 I 0 4950 3 0 2 M 36 108 5 0 2 I 0 2964 3 0 2 M 191 573
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2015-11-25
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
KB229801.1:subseq(936022,25245)	exonerate:protein2genome:local	gene	16421	25245	1318	-	.	gene_id 1 ; sequence  ; gene_orientation +
KB229801.1:subseq(936022,25245)	exonerate:protein2genome:local	cds	25024	25245	.	-	.	
KB229801.1:subseq(936022,25245)	exonerate:protein2genome:local	exon	25024	25245	.	-	.	insertions 0 ; deletions 0
KB229801.1:subseq(936022,25245)	exonerate:protein2genome:local	splice5	25022	25023	.	-	.	intron_id 1 ; splice_site "GT"
KB229801.1:subseq(936022,25245)	exonerate:protein2genome:local	intron	20070	25023	.	-	.	intron_id 1
KB229801.1:subseq(936022,25245)	exonerate:protein2genome:local	splice3	20070	20071	.	-	.	intron_id 0 ; splice_site "at"
KB229801.1:subseq(936022,25245)	exonerate:protein2genome:local	cds	19962	20069	.	-	.	
KB229801.1:subseq(936022,25245)	exonerate:protein2genome:local	exon	19962	20069	.	-	.	insertions 0 ; deletions 0
KB229801.1:subseq(936022,25245)	exonerate:protein2genome:local	splice5	19960	19961	.	-	.	intron_id 2 ; splice_site "at"
KB229801.1:subseq(936022,25245)	exonerate:protein2genome:local	intron	16994	19961	.	-	.	intron_id 2
KB229801.1:subseq(936022,25245)	exonerate:protein2genome:local	splice3	16994	16995	.	-	.	intron_id 1 ; splice_site "AG"
KB229801.1:subseq(936022,25245)	exonerate:protein2genome:local	cds	16421	16993	.	-	.	
KB229801.1:subseq(936022,25245)	exonerate:protein2genome:local	exon	16421	16993	.	-	.	insertions 0 ; deletions 0
KB229801.1:subseq(936022,25245)	exonerate:protein2genome:local	similarity	16421	25245	1318	-	.	alignment_id 1 ; Query  ; Align 25246 1 222 ; Align 20070 75 108 ; Align 16994 111 573
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis