_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:QUE_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 9e-20
 Query name: gi|947233264|ref|XP_014443772.1| PREDICTED: selenoprotein T [Tupaia chinensis]
 Query range: 1-195  (total 195)

 Target: /var/www/seblastian_output/369866576/tempfiles/temptarget.fasta
 Chromosome: KN996162.1:subseq_8697526,33378_ Strand: +
 Positions:
 -Exon 1  955          1091
 -Exon 2  15770        15880
 -Exon 3  16426        16552
 -Exon 4  18429        18516
 -Exon 5  20257        20378

 Redox box: YES

Query   MRLLLLFLVAASAVVRSEASANLGGVPSKRLKMQYATGPLLKFQIC <---Intron---> VSUGYRRVFEEYMRVISQRYPDIRIEGENYLPQPIYR 
        |||||| ||||||||||||||||||||||||||||||||||||||| <  14678bp   > ||||||||||||||||||||||||||||||||||||| 
Target  MRLLLLLLVAASAVVRSEASANLGGVPSKRLKMQYATGPLLKFQIC                VSUGYRRVFEEYMRVISQRYPDIRIEGENYLPQPIYR 
        aaccccccgggtgggcaggtgacgggcaaataactgagcccatcat                gttgtacgtggtacgaacctcgacagggatccccata 
        tgtttttttccccttggacccatggtcgagtataaccgcttatatg                tcggaggttaaatgttgagacatgtagaaatcactag 
        ggtggtcgggggggcgcgcgccgccgccgaagggccggggcgcgt                ttcattggatggcggttcggcaccctaagtcctaaata 
                                                                        *                                   

Query   <---Intron---> HIASFLSVFKLVLIGLIIVGKDPFAFFGMQAPSIWQWGQENKV <---Intron---> YACMMVFFLSNMIENQCMSTGAFEIT
        <   545bp    > ||||||||||||||||||||||||||||||||||||||||||| <   1876bp   > ||||||||||||||||||||||||||
Target                 HIASFLSVFKLVLIGLIIVGKDPFAFFGMQAPSIWQWGQENKV                YACMMVFFLSNMIENQCMSTGAFEIT
                       cagttctgtacgtagtaaggagctgttgacgcaatctgcgaag                tgtaagtttaaaagactataggtgaa
                       atccttcttattttgttttgaactcttgtaccgtgaggaaaa                tacgttttttgattaaagtccgctatc
                       caatcgaccaaaaacaattcgttttctcgattccgggcaatg                ctatggtccgccgtgcgtgaatatgat
                                                                                                            

Query   LNDV <---Intron---> PVWSKLESGHLPSMQQLVQILDNEMKLNVHMDSIPHHRS
        |||| <   1740bp   > |||||||||||||||||||||||||||||||||||||||
Target  LNDV                PVWSKLESGHLPSMQQLVQILDNEMKLNVHMDSIPHHRS
        tagg                cgttacgtgccctacccgcacgagaacagcagtacccct
        taa                tctgcatacgatcctaattattaaatatatatactcaagc
        att                atagtggattctacgaattattctaggctgtgtacactaa
                                                                   
 Sequence until next stop: 
TAG
 * 

 Distance CDS-SECIS: 579 ; UGA-SECIS: 1017

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = KN996162.1:subseq_8697526,33378_ Strand = + Positions = 20958 - 21032
 Found by:  Infernal (score=34.09) Covels (score=41.22)
 Stem2 length = 12   Apical loop length = 13   Insertion in stem2 = 0, 0
 Free Energy = -20.7

         ..(((((((.......(((((((((((((((...............))))))))))))))).........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuu-uuucaugaccggc
         ..([((([(---(...{[[{((((((((((((.............))))))))))))}]]}.....-..))])))])..
 target  GUGACUGAC---AUUAUGAAGGUCUGUACUGAAGACAGCAAGCUGUUGGUACAGACCAGAUGCUUU-CUUGGCAGGCUC
                         ****                                     ****                  
