_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 2e-11
 Query name: gi|197103028|ref|NP_001127136.1| ethanolaminephosphotransferase 1 [Pongo abelii] >gi|182636715|sp|Q5NV96.2|EPT1_PONAB RecName: Full=Ethanolaminephosphotransferase 1; AltName: Full=Selenoprotein I; Short=SelI >gi|56541799|emb|CAI30284.1| hypothetical protein [Pongo abelii]
 Query range: 19-397  (total 397)

 Target: /data/www-rg/seblastian_results/711442343/tempfiles/temptarget.fasta
 Chromosome: KN994950.1:subseq_104332,25133_ Strand: +
 Positions:
 -Exon 1  1000         1071
 -Exon 2  1497         1605
 -Exon 3  3804         3878
 -Exon 4  6983         7245
 -Exon 5  8572         8680
 -Exon 6  16529        16577
 -Exon 7  17998        18178
 -Exon 8  19412        19594
 -Exon 9  22038        22133

 Redox box: no

Query   KYSAVDTNPLSLYVMHPFWNTIVK <---Intron---> VFPTWLAPNLITFSGFLLVVFNFLLMAYFDPDFYASA <---Intron---> PGHKHVP
        /||||||||||||||||||||||| <   425bp    > ||||||||||||||||||||||||||||||||||||| <   2198bp   > |||||||
Target  QYSAVDTNPLSLYVMHPFWNTIVK                VFPTWLAPNLITFSGFLLVVFNFLLMAYFDPDFYASA                PGHKHVP
        ctagggaacctctgaccttaaaga                gtcatcgcacaattgtccggtatccagttgcgttgtg                cgcacgc
        aagctacactctattactgactta                ttccgtccattctcgttttttattttcatacatacc                ccgaaatc
        gcttgcctattgtggtatgctaag                atttggtctgatttctggtacttaagattttcttca                agtcgtgt
                                                                                                            

Query   DWVWIVVGILNFVAYTLD <---Intron---> GVDGKQARRTNSSTPLGELFDHGLDNWSYVYFVVTVYSIFGRGSTGVSVFVLYLLLWVVLFSFILS
        |||||||||||||||||| <   3104bp   > |||||||||||||||||||||||||/|| |||||||||||||||||||||||||||||||||||||
Target  DWVWIVVGILNFVAYTLD                GVDGKQARRTNSSTPLGELFDHGLDSWSCVYFVVTVYSIFGRGSTGVSVFVLYLLLWVVLFSFILS
        gtgtagggacatggtacg                ggggacgcaaataactggctgcgcgatttgttggagttatgagtaggagtgctccctggttttact
        agtgtttgttattcact                agtagaacggcacgcctgattaagtaggcgtatttctacttgggccgtgttttatttgttttctttc
        cgtgtagcccctaccta                ttacagatgacttctcaggttctcgttgattcttatgtcctaaaattcttttttcgagatgttccgc
                                                                                                            

Query   HWEKYNTGILFLPWGYDISQV <---Intron---> TISFVYIVTAVVGVEAWYEPFLFNFLYRDLFTAMIIG <---Intron---> CALCVTLPMS
        ||||||||||||||||||||| <   1326bp   > |||||||||||||||||||||||||||||||| |||| <   7848bp   > ||||||||||
Target  HWEKYNTGILFLPWGYDISQV                TISFVYIVTAVVGVEAWYEPFLFNFLYRDLFTTMIIG                CALCVTLPMS
        ctgataagactcctgtgaacg                aattgtagagggggggttgctctatttagctaaaaag                tgttgaccaa
        agaaaacgttttcggaatgat                ctcttattccttgtacgaactttattagattccttt                ggctgtctctg
        cgagtcagttcgagatctcgg                ttttccagtgtgatgcgtatcgttcatacactagtt                ctagtgttagt
                                                                                                            

Query   LLNFFR <---Intron---> SYKNNTLKLNSVYEAMVPLFSPCLLFILSTAWILWSPSDILELHPRVFYFMVGTAFANST <---Intron---> CQ
        |||||| <   1420bp   > |||||||| |||||||||||||||||/|||||||||||||||/|||/||||||||||| | <   1233bp   > ||
Target  LLNFFR                SYKNNTLKHNSVYEAMVPLFSPCLLFLLSTAWILWSPSDILEIHPRIFYFMVGTAFANIT                CQ
        ttatta                ataaaatacatgtggagctttcttctcttagtacttctgatgaccaatttaggagtgaaa                tc
        ttattg                gaaaactaaactaacttcttccgtttttcccgttgcccattatacgttatttgcctcatc                ga
        aactc                actatccgactactatgtcgttacggctgtaggctgatattagattaacctgtaactctca                tg
                                                                                                            

Query   LIVCQMSSTRCPTLNWLLVPLFLVVLVVNLGVASYVESILLYTLTTAFTLAHIHYGVRV <---Intron---> VKQLSSHFQIYPFSLRKPNSDULGM
        ||||||||||||||||||||||||||||||||/||/|||/||||||||||||||||||| <   2443bp   > |||||||||||||||||||||||||
Target  LIVCQMSSTRCPTLNWLLVPLFLVVLVVNLGVSSYIESIILYTLTTAFTLAHIHYGVRV                VKQLSSHFQIYPFSLRKPNSDULGM
        cagtcaaaactcatattcgccttggtggatggtttagaaactataagtacgcactggcg                gaccaactcatctttaacatgtcga
        tttgatggcggcctagtttcttttttttatgtccatagtttactccctctcataagtgt                taatggatatactctgacacagtgt
        gttcagttcgtatgtgggttccgtcagacaagctctgctcgtaaattctgcccttaaag                agggccttgtcccaggaacataaag
                                                                                                        *   

Query   EEKNIGL
        |||||||
Target  EEKNIGL
        ggaaagc
        aaaatgt
        aagttcg
               
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 1293 ; UGA-SECIS: 1323

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = KN994950.1:subseq_104332,25133_ Strand = + Positions = 23427 - 23505
 Found by:  Infernal (score=29.21) Covels (score=21.61)
 Stem2 length = 10   Apical loop length = 19   Insertion in stem2 = 0, 0
 Free Energy = -14.61

         ..(((((((.......(((((((((((((((...................))))))))))))))).........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC----cuuuuuggggcgggccaggcCuGAUGuuu-uuucaugaccggc
         (({({(((((--(...{[[[((((((({(((...................)))})))))))]]]}.....-)-)))))})}))
 target  CGUUUGUGCU--UUAAUGAAGAGUGUAUCUUAAACCCCCUUUUUUUGGACAGGUUGCACUUGGAUAAAAU-A-GGCACCACUG
                         ****           ^^^                           ****                  