------- SECIS element -- id:1 -- grade:A ----
 Chromosome = KN992878.1:subseq_351283,200392_ Strand = - Positions = 42899 - 42827
 Found by:  Infernal (score=28.67) Covels (score=35.05)
 Stem2 length = 10   Apical loop length = 17   Insertion in stem2 = 0, 0
 Free Energy = -22.5

         ..(((((((.......(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         .({(((((((--....{[[{((((((((((.................))))))))))}]]}..--..-)))))))}).
 target  GAACCUCAGC--GGGAUGAUGAGAAGAACUGAAAUGUUGCUAAGUCAGGUUCUUUUCUGAUGG--UG-GCUGGGGCUG
                         ****           ^^^                       ****                 

------- SECIS element -- id:2 -- grade:B ----
 Chromosome = KN992878.1:subseq_351283,200392_ Strand = - Positions = 175514 - 175444
 Found by:  Infernal (score=16.1) Covels (score=6.96)
 Stem2 length = 10   Apical loop length = 13   Insertion in stem2 = 1, 0
 Free Energy = -8.3

         ..(((((((.......((((((((((((.(((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggc-ccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ...({((((.--....{[[{((((({((.(((.....--........)))))})))))}]]}----....))))})...
 target  GGAGUGCAGU--GGCAUGAUCUUGAUUCCCUGCAACC--UCUGCCUCCAGGAUUUAAGUGAU----UCUCCUGCCUCAG
                         ****             ^^                       ****                 

------- SECIS element -- id:3 -- grade:B ----
 Chromosome = KN992878.1:subseq_351283,200392_ Strand = - Positions = 26824 - 26741
 Found by:  Infernal (score=11.76)
 Stem2 length = 8   Apical loop length = 25   Insertion in stem2 = 0, 0
 Free Energy = -6.1

         ..(((((((.......(((((((((((((((.......................)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC--------cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         .((({(([(.......{[[({(({((((((.........................))))))}))})]]}..--....)]))}))).
 target  CGUAACUAUUCUCUAUUGAUAAACUUAUCACAACCAAGUUCUUCUAUCAGAGGGUUGAUAACUUCAGAUGC--AGUCAGAGCUAUC
                         ****           ^^                                ****                 

