
genewise output
Score 17.23 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000067_2.0  121 VRGSDPVLKLL                                       
                     +RG+ PVL+L+                                       
                     IRGTQPVLRLV                                       
KQ009392.1:subs71576 aagaccgcatg                                       
                     tggcacttgtt                                       
                     aattatagaaa                                       


//
>KQ009392.1:subseq(14173610,100128).pep
IRGTQPVLRLV
//
>KQ009392.1:subseq(14173610,100128).[71576:71608].sp
ATAAGAGGTACTCAACCTGTACTGAGATTAGTA
//
KQ009392.1:subseq(14173610,100128)	GeneWise	match	71576	71608	17.23	+	.	KQ009392.1:subseq(14173610,100128)-genewise-prediction-1
KQ009392.1:subseq(14173610,100128)	GeneWise	cds	71576	71608	0.00	+	0	KQ009392.1:subseq(14173610,100128)-genewise-prediction-1
//

genewise output
Score 273.02 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000067_2.0    1 MAAGPSGCLVPAFGLRLLLATVLQA                       V 
                     MAAG SG LVP FGLRLLLATVLQA                       V 
                     MAAGLSGWLVPTFGLRLLLATVLQA                       V 
KQ009392.1:sub-99287 agggcagtcgcatgcctttgagccgGTGAGTG  Intron 1   CAGg 
                     tccgtgggttcctgtgtttccttac<0-----[99212:88053]-0>t 
                     ggtggtggggggtgagggggtgtag                       t 


SPP00000067_2.0   27 SAFGAEFSSEACRELGFSSNLLCSSCDLLGQFNLLQLDPDCRGCCQEEA 
                     SAFGAEFSSEACRELGFSSNLLCSSCDLLGQFNLLQLDPDCRGCCQEEA 
                     SAFGAEFSSEACRELGFSSNLLCSSCDLLGQFNLLQLDPDCRGCCQEEA 
KQ009392.1:sub-88049 tgtgggtttggtagtgttaatctattgccgctaccccgcgtagttcggg 
                     cctgcatccacggatgtcgattggcgattgatattatacagggggaaac 
                     tttgagtaagacagacttccgcccttttcagccgtggtttcaactggaa 


SPP00000067_2.0   76 QFETKK                       LYAGAILEVCGXKLGRFPQV 
                     QFETKK                       LYAGAILEVCGXKLGRFPQV 
                     QFETKK                       LYAGAILEVCGXKLGRFPQV 
KQ009392.1:sub-87902 ctgaaaGTACTGT  Intron 2   TAGctgggacggtgtatgatccg 
                     atacaa<0-----[87884:67219]-0>tacgcttatgggatggtcat 
                     atacag                       gtaatttattaaagagctac 


SPP00000067_2.0  102 Q                          FVRSDKPKLFRGLQIK       
                     Q                          FVRSDKPKLFRGLQIK       
                     Q          A:A[gct]        FVRSDKPKLFRGLQIK       
KQ009392.1:sub-67158 cGGTATATA  Intron 3   AAGCTtgaagacattagccaa       
                     a <1-----[67154:54855]-1>  ttggaacattggtata       
                     a                          ctgttacagcaaaacg       


SPP00000067_2.0  120                        YVRGSDPVLKLLDDNGNIAEELSILK 
                                            YVRGSDP+LKLLDDNGNIAEELSILK 
                                            YVRGSDPILKLLDDNGNIAEELSILK 
KQ009392.1:sub-54804 GTAAGGT  Intron 4   TAGtgcgtgcatactggagaagggcaaca 
                     <0-----[54804:50129]-0>atggcacttattaaagatcaatgtta 
                                            tcttactaagtgtctgcttaaactca 


SPP00000067_2.0  146 WNTDSVEEFLSEKLERI                                 
                     WNTDSVEEFLSEKLERI                                 
                     WNTDSVEEFLSEKLERI                                 
KQ009392.1:sub-50050 taagagggtcagatgca                                 
                     gacagtaattgaatagt                                 
                     gcactaaacgtaggaca                                 


//
Making a A in phase 1 intron
>KQ009392.1:subseq(14173610,100128).pep
MAAGLSGWLVPTFGLRLLLATVLQAVSAFGAEFSSEACRELGFSSNLLCSSCDLLGQFNL
LQLDPDCRGCCQEEAQFETKKLYAGAILEVCGXKLGRFPQVQAFVRSDKPKLFRGLQIKY
VRGSDPILKLLDDNGNIAEELSILKWNTDSVEEFLSEKLERI
//
>KQ009392.1:subseq(14173610,100128).[99287:49998].sp
ATGGCGGCTGGGCTGAGTGGGTGGCTGGTGCCGACGTTTGGGCTACGGTTGTTGTTGGCG
ACTGTGCTTCAAGCGGTTTCTGCTTTTGGGGCAGAGTTTTCATCAGAGGCATGCAGAGAG
TTAGGCTTTTCTAGCAACTTGCTCTGCAGCTCTTGTGATCTTCTCGGACAGTTCAACCTG
CTTCAGCTGGATCCTGATTGCAGAGGATGCTGTCAGGAGGAAGCACAATTTGAAACCAAA
AAGCTGTATGCAGGAGCTATTCTTGAAGTTTGTGGATGAAAATTGGGAAGGTTCCCTCAA
GTCCAAGCTTTCGTTAGGAGTGATAAACCCAAATTGTTCAGAGGACTACAAATCAAGTAT
GTCCGTGGTTCAGACCCTATATTAAAGCTTTTGGATGACAATGGGAACATTGCTGAAGAA
CTAAGCATTCTCAAATGGAACACAGACAGTGTAGAAGAATTCCTGAGTGAAAAGTTGGAA
CGCATA
//
KQ009392.1:subseq(14173610,100128)	GeneWise	match	99287	50000	273.02	-	.	KQ009392.1:subseq(14173610,100128)-genewise-prediction-1
KQ009392.1:subseq(14173610,100128)	GeneWise	cds	99287	99213	0.00	-	0	KQ009392.1:subseq(14173610,100128)-genewise-prediction-1
KQ009392.1:subseq(14173610,100128)	GeneWise	intron	99212	88053	0.00	-	.	KQ009392.1:subseq(14173610,100128)-genewise-prediction-1
KQ009392.1:subseq(14173610,100128)	GeneWise	cds	88052	87885	0.00	-	0	KQ009392.1:subseq(14173610,100128)-genewise-prediction-1
KQ009392.1:subseq(14173610,100128)	GeneWise	intron	87884	67219	0.00	-	.	KQ009392.1:subseq(14173610,100128)-genewise-prediction-1
KQ009392.1:subseq(14173610,100128)	GeneWise	cds	67218	67155	0.00	-	0	KQ009392.1:subseq(14173610,100128)-genewise-prediction-1
KQ009392.1:subseq(14173610,100128)	GeneWise	intron	67154	54855	0.00	-	.	KQ009392.1:subseq(14173610,100128)-genewise-prediction-1
KQ009392.1:subseq(14173610,100128)	GeneWise	cds	54854	54805	0.00	-	2	KQ009392.1:subseq(14173610,100128)-genewise-prediction-1
KQ009392.1:subseq(14173610,100128)	GeneWise	intron	54804	50129	0.00	-	.	KQ009392.1:subseq(14173610,100128)-genewise-prediction-1
KQ009392.1:subseq(14173610,100128)	GeneWise	cds	50128	50000	0.00	-	0	KQ009392.1:subseq(14173610,100128)-genewise-prediction-1
//
