
genewise output
Score 590.48 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000146_2.0    1 MAASLWMGD                       LEPYMDENFISRAFATM 
                     MAASLWMGD                       LEPYMDENFISRAFATM 
                     MAASLWMGD                       LEPYMDENFISRAFATM 
KQ005701.1:subs49493 aggactaggGTGAGTG  Intron 1   CAGcgctaggatatagtgaa 
                     tccgtgtga<0-----[49520:50020]-0>tacataaattcgctcct 
                     ggccgggcc                       gaccgtgccccattccg 


SPP00000146_2.0   27 GETVMSVKIIRNRLT                          IPAGYCFV 
                     GETVMSVKIIRNRLT                          IPAGYCFV 
                     GETVMSVKIIRNRLT           G:G[ggg]       IPAGYCFV 
KQ005701.1:subs50072 ggagaagaaacaccaGGGTAAGTC  Intron 2   CAGGacggtttg 
                     gacttgtattgagtc  <2-----[50119:58979]-2> tccgagtt 
                     gggagccatcaccct                          catcccta 


SPP00000146_2.0   51 EFADLATAEKCLHKINGKPLPGATP                       A 
                     EFADLATAEKCLHKINGKPLPGATP                       A 
                     EFADLATAEKCLHKINGKPLPGATP                       A 
KQ005701.1:subs59005 gtggtgaggattcaaagacccggacGTAAGGA  Intron 3   CAGg 
                     atcatcccaagtaatagactcgccc<0-----[59080:59692]-0>c 
                     acatgcttggtgtattgactaacat                       g 


SPP00000146_2.0   77 KRFKLNYATYGKQPDN                          PEYSLFV 
                     KRFKLNYATYGKQPDN                          PEYSLFV 
                     KRFKLNYATYGKQPDN           S:S[agc]       PEYSLFV 
KQ005701.1:subs59696 actacatgatgaccgaAGGTAGGTA  Intron 4   CAGCcgttctg 
                     agtataaccagaacaa  <2-----[59746:62122]-2> caacttt 
                     attagctcttgaaatc                          tgtcctg 


SPP00000146_2.0  101 GDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVS              
                     GDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVS              
                     GDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVS              
KQ005701.1:subs62145 ggcacgggggactgttgagtcttcggaggtgcaggt              
                     gatccataagttaatttataccggggatttaacgtc              
                     gcgcacgttcggtacccacccctgacggtgcgacgt              


SPP00000146_2.0  137                           GYGFVKFTDELEQKRALTECQGA 
                                               GYGFVKFTDELEQKRALTECQGA 
                                K:K[aag]       GYGFVKFTDELEQKRALTECQGA 
KQ005701.1:subs62253 AAGTAAGGC  Intron 5   CAGGgtgtgataggcgcacgcagtcgg 
                       <2-----[62255:65216]-2> gagttatcaataaagctcagagc 
                                               ttttgacatagaggacgggcgaa 


SPP00000146_2.0  161 VGLGSKPVRLSVAIPK                          SRVKPVE 
                     VGLG+KPVRLSVAIPK                          SRVKPVE 
                     VGLGAKPVRLSVAIPK           A:A[gcg]       SRVKPVE 
KQ005701.1:subs65287 ggcggacgccaggacaGCGTGAGTC  Intron 6   AAGGacgacgg 
                     tgtgcactgtgtctca  <2-----[65337:71738]-2> ggtacta 
                     gaggtgtgggcgacta                          ctagaga 


SPP00000146_2.0  185 YSQMYSYSYNQYYQQYQNYYAQWGYDQNTGSYSYSYPQYGYTQSTMQ   
                     YSQMYSYSYNQYYQQYQNYYAQWGYDQNTGSYSYSYPQYGYTQSTMQ   
                     YSQMYSYSYNQYYQQYQNYYAQWGYDQNTGSYSYSYPQYGYTQSTMQ   
KQ005701.1:subs71761 tacatatatacttcctcattgctgtgcaagatatatcctgtacaaac   
                     agatagagaaaaaaaaaaaacaggaaaacggagagacaagacagcta   
                     ttggctccccgttggcgccttggctcgcaccccctccgtctcgccgg   


SPP00000146_2.0  232                        TYEEVGDDALE                
                                            TYEEVGDDALE                
                                            TYEEVGDDALE                
KQ005701.1:subs71902 GTAACCA  Intron 7   CAGatgggggggtg                
                     <0-----[71902:72439]-0>caaatgaacta                
                                            ataatattaga                


SPP00000146_2.0  243                           PMPQLDVTEANKEFMEQSEELYD 
                                               PMPQLDVTEANKEFMEQSEELYD 
                               D:D[gac]        PMPQLDVTEANKEFMEQSEELYD 
KQ005701.1:subs72473 GGTAAGGG  Intron 8   TAGACcacccggaggaagtagcaggctg 
                      <1-----[72474:81317]-1>  ctcatatcacaaattaagaataa 
                                               cgaggtgtgccagcgagtgggtt 


SPP00000146_2.0  267 ALMDCHWQPLDTVSSEIPAMM                             
                     ALMDCHWQPLDTVSSEIPAMM                             
                     ALMDCHWQPLDTVSSEIPAMM                             
KQ005701.1:subs81389 gcagtctcccgagttgacgaa                             
                     cttagagactactccatcctt                             
                     tggctcggcgcagtagctcgg                             


//
Making a G in phase 2 intron
Making a S in phase 2 intron
Making a K in phase 2 intron
Making a A in phase 2 intron
Making a D in phase 1 intron
>KQ005701.1:subseq(7341436,100209).pep
MAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEK
CLHKINGKPLPGATPAKRFKLNYATYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVY
PSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGAKPVRLSVAIPKASRV
KPVEYSQMYSYSYNQYYQQYQNYYAQWGYDQNTGSYSYSYPQYGYTQSTMQTYEEVGDDA
LEDPMPQLDVTEANKEFMEQSEELYDALMDCHWQPLDTVSSEIPAMM
//
>KQ005701.1:subseq(7341436,100209).[49493:81451].sp
ATGGCGGCCAGCCTGTGGATGGGCGACCTGGAACCCTACATGGATGAGAACTTCATCTCC
AGAGCTTTTGCCACCATGGGGGAGACGGTAATGAGCGTCAAAATTATCCGAAACCGCCTC
ACTGGGATCCCAGCTGGCTACTGCTTTGTAGAATTCGCAGATTTGGCCACTGCTGAGAAG
TGTTTGCATAAAATTAATGGGAAACCCCTTCCAGGAGCCACACCTGCGAAACGTTTTAAA
CTGAACTATGCCACTTATGGGAAACAACCAGATAACAGCCCTGAGTATTCCCTCTTTGTG
GGGGACCTGACCCCAGACGTGGATGATGGCATGCTGTATGAATTCTTCGTCAAAGTCTAC
CCCTCCTGTCGGGGAGGCAAGGTGGTTTTGGACCAGACAGGCGTGTCTAAGGGTTATGGT
TTTGTGAAATTCACAGATGAACTGGAACAGAAGCGAGCCCTGACGGAGTGCCAGGGAGCA
GTGGGACTGGGGGCTAAGCCTGTGCGGCTGAGCGTGGCAATCCCTAAAGCGAGCCGTGTA
AAGCCAGTGGAATATAGTCAGATGTACAGTTACAGCTACAACCAGTATTATCAGCAGTAC
CAGAACTACTATGCTCAGTGGGGCTATGACCAGAACACAGGCAGCTACAGCTACAGTTAC
CCCCAGTATGGCTATACCCAGAGCACCATGCAGACATATGAAGAAGTTGGAGATGATGCA
TTGGAAGACCCCATGCCACAGCTGGATGTGACTGAGGCCAACAAAGAGTTCATGGAACAG
AGTGAGGAGCTGTATGATGCTCTGATGGACTGTCACTGGCAGCCCCTGGACACAGTGTCT
TCAGAGATCCCTGCCATGATG
//
KQ005701.1:subseq(7341436,100209)	GeneWise	match	49493	81451	590.48	+	.	KQ005701.1:subseq(7341436,100209)-genewise-prediction-1
KQ005701.1:subseq(7341436,100209)	GeneWise	cds	49493	49519	0.00	+	0	KQ005701.1:subseq(7341436,100209)-genewise-prediction-1
KQ005701.1:subseq(7341436,100209)	GeneWise	intron	49520	50020	0.00	+	.	KQ005701.1:subseq(7341436,100209)-genewise-prediction-1
KQ005701.1:subseq(7341436,100209)	GeneWise	cds	50021	50118	0.00	+	0	KQ005701.1:subseq(7341436,100209)-genewise-prediction-1
KQ005701.1:subseq(7341436,100209)	GeneWise	intron	50119	58979	0.00	+	.	KQ005701.1:subseq(7341436,100209)-genewise-prediction-1
KQ005701.1:subseq(7341436,100209)	GeneWise	cds	58980	59079	0.00	+	1	KQ005701.1:subseq(7341436,100209)-genewise-prediction-1
KQ005701.1:subseq(7341436,100209)	GeneWise	intron	59080	59692	0.00	+	.	KQ005701.1:subseq(7341436,100209)-genewise-prediction-1
KQ005701.1:subseq(7341436,100209)	GeneWise	cds	59693	59745	0.00	+	0	KQ005701.1:subseq(7341436,100209)-genewise-prediction-1
KQ005701.1:subseq(7341436,100209)	GeneWise	intron	59746	62122	0.00	+	.	KQ005701.1:subseq(7341436,100209)-genewise-prediction-1
KQ005701.1:subseq(7341436,100209)	GeneWise	cds	62123	62254	0.00	+	1	KQ005701.1:subseq(7341436,100209)-genewise-prediction-1
KQ005701.1:subseq(7341436,100209)	GeneWise	intron	62255	65216	0.00	+	.	KQ005701.1:subseq(7341436,100209)-genewise-prediction-1
KQ005701.1:subseq(7341436,100209)	GeneWise	cds	65217	65336	0.00	+	1	KQ005701.1:subseq(7341436,100209)-genewise-prediction-1
KQ005701.1:subseq(7341436,100209)	GeneWise	intron	65337	71738	0.00	+	.	KQ005701.1:subseq(7341436,100209)-genewise-prediction-1
KQ005701.1:subseq(7341436,100209)	GeneWise	cds	71739	71901	0.00	+	1	KQ005701.1:subseq(7341436,100209)-genewise-prediction-1
KQ005701.1:subseq(7341436,100209)	GeneWise	intron	71902	72439	0.00	+	.	KQ005701.1:subseq(7341436,100209)-genewise-prediction-1
KQ005701.1:subseq(7341436,100209)	GeneWise	cds	72440	72473	0.00	+	0	KQ005701.1:subseq(7341436,100209)-genewise-prediction-1
KQ005701.1:subseq(7341436,100209)	GeneWise	intron	72474	81317	0.00	+	.	KQ005701.1:subseq(7341436,100209)-genewise-prediction-1
KQ005701.1:subseq(7341436,100209)	GeneWise	cds	81318	81451	0.00	+	2	KQ005701.1:subseq(7341436,100209)-genewise-prediction-1
//

genewise output
Score 17.19 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000146_2.0   27 GETVMSVKIIRNRLTGI                                 
                     GET+  +KI + +L G+                                 
                     GETLSLLKIPKKKLAGV                                 
KQ005701.1:sub-32911 ggactccaacaaatggg                                 
                     gactcttatcaaatcgt                                 
                     tacgtaaaaaaaaagcg                                 


//
>KQ005701.1:subseq(7341436,100209).pep
GETLSLLKIPKKKLAGV
//
>KQ005701.1:subseq(7341436,100209).[32911:32859].sp
GGTGAAACCCTGTCTCTACTAAAAATACCAAAAAAAAAATTAGCGGGCGTG
//
KQ005701.1:subseq(7341436,100209)	GeneWise	match	32911	32861	17.19	-	.	KQ005701.1:subseq(7341436,100209)-genewise-prediction-1
KQ005701.1:subseq(7341436,100209)	GeneWise	cds	32911	32861	0.00	-	0	KQ005701.1:subseq(7341436,100209)-genewise-prediction-1
//
