
genewise output
Score 998.00 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000138_2.0    1 MAAMAVALRGLGGRFRWRTQAVAGGVRGAARGAA                
                     MAAMAVALRGLGGRFRWRTQAVAGGVRGAARGAA                
                     MAAMAVALRGLGGRFRWRTQAVAGGVRGAARGAA                
KQ009283.1:subs12652 aggagggccgtggctctcacggggggcgggcggg                
                     tcctctctggtgggtgggcactcggtggccggcc                
                     gggggggggaaagccgggggcggcgagctggcga                


SPP00000138_2.0   35                           GQRDYDLLVVGGGSGGLACAKE  
                                               GQRDYDLLV+GGGSGGLACAKE  
                               A:A[gca]        GQRDYDLLVIGGGSGGLACAKE  
KQ009283.1:subs12754 GGTAGGAT  Intron 1   CAGCAgccgtgccgagggtggcgtgag  
                      <1-----[12755:22986]-1>  gagaaattttgggcggtcgcaa  
                                               tggcttcggtcgatccgttcgg  


SPP00000138_2.0   58                           AQLGRKVAVVDYVEPSPQ      
                                               AQLGRKVAVVDYVEPSPQ      
                               A:A[gcc]        AQLGRKVAVVDYVEPSPQ      
KQ009283.1:subs23055 GGTATGTA  Intron 2   CAGCCgccgaagggggtggctcc      
                      <1-----[23056:38846]-1>  catggatcttaataccca      
                                               tggagggcggccgattca      


SPP00000138_2.0   77                           TRWGLGGTCVNVGCIPKKLMHQA 
                                               TRWGLGGTCVNVGCIPKKLMHQA 
                               G:G[ggc]        TRWGLGGTCVNVGCIPKKLMHQA 
KQ009283.1:subs38903 GGTAGGCA  Intron 3   CAGGCactgcggatgaggtacaacaccg 
                      <1-----[38904:40060]-1>  cgggtggcgtatggtcaattaac 
                                               cggccccccccgctccggggcgg 


SPP00000138_2.0  101 ALLGGLIQDAPNYGWEVAQPVPHD                          
                     ALLGGLIQDAP+YGWEVAQPVPHD                          
                     ALLGGLIQDAPHYGWEVAQPVPHD           W:W[tgg]       
KQ009283.1:subs40132 gccggcacggcctgtgggccgccgTGGTAAGGA  Intron 4       
                     cttggttaaccaaggatcactcaa  <2-----[40206:40848]    
                     aggacgcatcccccgggcgcggtc                          


SPP00000138_2.0  125     RKMAEAVQNHVKSLNWGHRVQLQD                      
                         RKMAEAVQNHVKSLNWGHRVQLQD                      
                         RKMAEAVQNHVKSLNWGHRVQLQD                      
KQ009283.1:subs40846 CAGGaaaggggcacgattatgccgcccg                      
                     -2> gatcactaaatactaggagtataa                      
                         gggaattatcggcgcgcctcgggc                      


SPP00000138_2.0  150                           KVKYFNIKASFVDEHTVCGVAKG 
                                               KVKYFNIKASFVDEHTVCGVAKG 
                                R:R[aga]       KVKYFNIKASFVDEHTVCGVAKG 
KQ009283.1:subs40922 AGGTACTGA  Intron 5   CAGAagattaaagatgggcagtgggag 
                       <2-----[40924:44988]-2> ataatatacgttaaactggtcag 
                                               acgctccaccttcgcgttctcat 


SPP00000138_2.0  174 GKE                       ILLSADHIIIATGGRPRYPTH   
                     GKE                       ILLSADHIIIATGGRPRYPTH   
                     GKE                       ILLSADHIIIATGGRPRYPTH   
KQ009283.1:subs45059 gagGTGAGCA  Intron 6   CAGacctggcaaagaggccatcac   
                     gaa<0-----[45068:45549]-0>tttccaatttccgggcgacca   
                     gag                       tgaatcccctttaggggccac   


SPP00000138_2.0  198                        IEGALEYGITSDDIFWLKESPGK    
                                            IEGALEYGITSDDIFWLKESPGK    
                                            IEGALEYGITSDDIFWLKESPGK    
KQ009283.1:subs45613 GTGAGTG  Intron 7   CAGagggtgtgaaaggattcagtcga    
                     <0-----[45613:50002]-0>tagctaagtcgaattgtaaccga    
                                            catcgatacattcccgggactaa    


SPP00000138_2.0  221                           LVVGAS                  
                                               LVVGAS                  
                                T:T[acg]       LVVGAS                  
KQ009283.1:subs50072 ACGTAAGGC  Intron 8   CAGGtgggga                  
                       <2-----[50074:60998]-2> tttgcg                  
                                               ggcgcc                  


SPP00000138_2.0  228                           VALECAGFLTGIGLDTTIMMRSI 
                                               VALECAGFLTGIGLDTT+M+RSI 
                               Y:Y[tac]        VALECAGFLTGIGLDTTVMIRSI 
KQ009283.1:subs61018 TGTATCCT  Intron 9   CAGACggcgtggtcagagcgaagaacaa 
                      <1-----[61019:61900]-1>  tctagcgttcgtgtacctttggt 
                                               gcggttccccgcggccccgaccc 


SPP00000138_2.0  252 PLRGFDQ                       QMSSMVIEHMASHGTRFLR 
                     PLRGFDQ                       QMSSMVIEHMASHGT+FLR 
                     PLRGFDQ                       QMSSMVIEHMASHGTQFLR 
KQ009283.1:subs61972 cccgtgcGTAGTGC  Intron 10  CAGcattagagcagtcgactca 
                     ctggtaa<0-----[61993:64740]-0>atcctttaatccagcattg 
                     ccccccg                       agccgcagcgattccgcgg 


SPP00000138_2.0  278 GCAPSRVRRLPDGQLQVTWEDSTTGKEDTGTFDTVLWAI           
                     GCAPSRVRRLPDG LQVTWED TTGKEDTGTFDTVLWAI           
                     GCAPSRVRRLPDGHLQVTWEDCTTGKEDTGTFDTVLWAI           
KQ009283.1:subs64798 gtgctcgaaccggcccgatggtaagaggagatgagctga           
                     ggcccgtggtcagatatcgaagccgaaacgctacttgct           
                     ctcccacggcttccggccggccctcggcaccccccggca           


SPP00000138_2.0  317                           RVPDTRSLNLEKAGVDTSPDTQK 
                                               RVPDTRSLNLEKAGVDTSPDTQK 
                               G:G[ggt]        RVPDTRSLNLEKAGVDTSPDTQK 
KQ009283.1:subs64915 GGTAAGGG  Intron 11  CAGGTcgcgaaacatgaggggaacgaca 
                      <1-----[64916:77739]-1>  gtcacggtataacgtacgcacaa 
                                               aaaccatgtgggtgattccctgg 


SPP00000138_2.0  341 ILVDSREATSVPHIYAIGDVVE                       GRPE 
                     ILVDSRE TSVPHIYAIGDVVE                       GRPE 
                     ILVDSREGTSVPHIYAIGDVVE                       GRPE 
KQ009283.1:subs77811 acggtcggatgccatgagggggGTACGGC  Intron 12  AAGgccg 
                     tttacgagcctcatactgatta<0-----[77877:80467]-0>ggca 
                     cggccgacctgcccccttcggg                       ggtg 


SPP00000138_2.0  367 LTPIAIMAGRLLVQRLFGGSSDLMDYDN                      
                     LTP AIMAGRLLVQRLFGGSSDLMDYDN                      
                     LTPTAIMAGRLLVQRLFGGSSDLMDYDN                      
KQ009283.1:subs80480 cacagaaggaccgccctggttgcagtgaGTGAGTT  Intron 13    
                     tccccttcggtttagttggccattaaaa<0-----[80564:80914]  
                     gacgccgtggcggggcccgcacggctct                      


SPP00000138_2.0  395    VPTTVFTPLEYGCVGLSEEEAVARHGQEHVE                
                        VPTTVFTPLEYGCVGLSEEEAVARHGQEHVE                
                        VPTTVFTPLEYGCVGLSEEEAVARHGQEHVE                
KQ009283.1:subs80912 CAGgcaagtaccgtgtggctggggggccgcgcgg                
                     -0>tcccttcctaaggtgtcaaactcgagaaata                
                        tcgccccgggtctgggcgggagtccgggttg                


SPP00000138_2.0  426                        VYHAHYKPLEFTVAGRDASQCYVK   
                                            VYHAHYKPLEFTVAGRDASQCYVK   
                                            VYHAHYKPLEFTVAGRDASQCYVK   
KQ009283.1:subs81008 GTGAGGC  Intron 14  CAGgtcgctaccgtagggcggtcttga   
                     <0-----[81008:82729]-0>taacaaactatctcggaccagata   
                                            ctccttaggacggtagtacgttag   


SPP00000138_2.0  450                        MVCLREPPQLVLGLHFLGPNAGEVTQ 
                                            MVCLREPPQLVLGLHFLGPNAGEVTQ 
                                            MVCLREPPQLVLGLHFLGPNAGEVTQ 
KQ009283.1:subs82802 GTGAGCA  Intron 15  CAGagtcagccccgcgcctcgcaggggac 
                     <0-----[82802:82979]-0>ttgtgaccatttgtattgcacgatca 
                                            ggcgggcgggggcgcctcccacatta 


SPP00000138_2.0  476 GFALGI                          CGASYAQVMRTVGIHPT 
                     GFALGI                          CGASYAQVMRTVGIHPT 
                     GFALGI           K:K[aag]       CGASYAQVMRTVGIHPT 
KQ009283.1:subs83058 gtgcgaAAGTAAGTC  Intron 16  CAGGtggttgcgacaggacca 
                     gtctgt  <2-----[83078:83939]-2> ggccacattgctgtacc 
                     attggc                          tgcccgggggcgtctca 


SPP00000138_2.0  500 CSEEVVKLRISKRSGLDPTVTGC                           
                     CSEEVVKLRISKRSGLDPTVTGC                           
                     CSEEVVKLRISKRSGLDPTVTGC                           
KQ009283.1:subs83992 ttggggaccatactgcgcagagt                           
                     gcaattatgtcagcgtacctcgg                           
                     ccggacggcccgcacgccggacc                           


//
Making a A in phase 1 intron
Making a A in phase 1 intron
Making a G in phase 1 intron
Making a W in phase 2 intron
Making a R in phase 2 intron
Making a T in phase 2 intron
Making a Y in phase 1 intron
Making a G in phase 1 intron
Making a K in phase 2 intron
>KQ009283.1:subseq(2315798,100074).pep
MAAMAVALRGLGGRFRWRTQAVAGGVRGAARGAAAGQRDYDLLVIGGGSGGLACAKEAAQ
LGRKVAVVDYVEPSPQGTRWGLGGTCVNVGCIPKKLMHQAALLGGLIQDAPHYGWEVAQP
VPHDWRKMAEAVQNHVKSLNWGHRVQLQDRKVKYFNIKASFVDEHTVCGVAKGGKEILLS
ADHIIIATGGRPRYPTHIEGALEYGITSDDIFWLKESPGKTLVVGASYVALECAGFLTGI
GLDTTVMIRSIPLRGFDQQMSSMVIEHMASHGTQFLRGCAPSRVRRLPDGHLQVTWEDCT
TGKEDTGTFDTVLWAIGRVPDTRSLNLEKAGVDTSPDTQKILVDSREGTSVPHIYAIGDV
VEGRPELTPTAIMAGRLLVQRLFGGSSDLMDYDNVPTTVFTPLEYGCVGLSEEEAVARHG
QEHVEVYHAHYKPLEFTVAGRDASQCYVKMVCLREPPQLVLGLHFLGPNAGEVTQGFALG
IKCGASYAQVMRTVGIHPTCSEEVVKLRISKRSGLDPTVTGC
//
>KQ009283.1:subseq(2315798,100074).[12652:84060].sp
ATGGCGGCGATGGCGGTGGCGCTGCGGGGATTAGGAGGGCGCTTCCGGTGGCGGACGCAG
GCCGTGGCGGGCGGGGTACGGGGCGCTGCGCGGGGCGCGGCAGCAGGTCAGCGGGACTAT
GATCTCCTGGTGATTGGCGGGGGATCTGGCGGCCTGGCTTGTGCCAAGGAGGCCGCTCAG
CTGGGAAGGAAGGTGGCCGTGGTGGACTACGTGGAACCTTCTCCCCAAGGCACCCGGTGG
GGCCTCGGCGGCACCTGCGTCAACGTGGGCTGTATCCCCAAGAAGCTGATGCACCAGGCG
GCACTGCTGGGAGGCCTGATCCAAGATGCCCCCCACTACGGCTGGGAGGTGGCCCAGCCC
GTGCCGCATGACTGGAGGAAGATGGCAGAAGCTGTTCAAAATCACGTGAAGTCCTTGAAC
TGGGGCCACCGTGTCCAGCTGCAGGACAGAAAAGTCAAGTACTTTAACATCAAAGCCAGC
TTTGTTGACGAGCACACGGTTTGTGGCGTTGCCAAAGGTGGGAAAGAGATTCTGCTATCA
GCTGACCACATCATCATTGCTACTGGAGGGCGGCCGAGGTACCCCACACACATCGAAGGT
GCCTTGGAATATGGAATCACAAGTGATGACATCTTCTGGCTGAAGGAATCCCCTGGAAAA
ACGTTGGTGGTCGGGGCCAGCTACGTGGCCCTGGAGTGTGCTGGCTTCCTCACCGGGATC
GGGCTGGACACCACCGTCATGATACGCAGCATCCCCCTCCGCGGCTTCGACCAGCAAATG
TCCTCCATGGTCATAGAGCACATGGCATCTCATGGCACCCAGTTCCTGAGGGGCTGTGCC
CCCTCCCGAGTCAGGAGGCTCCCTGATGGCCACCTGCAGGTCACCTGGGAGGACTGCACC
ACTGGCAAGGAGGACACAGGCACCTTCGACACCGTCCTGTGGGCCATAGGTCGAGTACCA
GACACCAGAAGTCTGAATTTGGAGAAGGCTGGGGTAGATACTAGCCCCGACACTCAGAAG
ATCCTGGTGGACTCCCGGGAAGGCACCTCTGTGCCCCACATCTACGCCATTGGTGACGTG
GTGGAGGGGCGGCCTGAGCTGACACCCACGGCCATCATGGCTGGGAGGCTCCTGGTGCAG
CGGCTCTTCGGCGGGTCCTCAGACCTGATGGACTATGACAATGTTCCCACGACCGTCTTC
ACCCCGCTGGAGTATGGCTGTGTGGGGCTGTCCGAGGAGGAGGCAGTGGCTCGCCACGGG
CAGGAGCATGTTGAGGTCTATCACGCCCATTATAAACCGCTGGAATTCACGGTGGCTGGA
CGGGATGCATCCCAGTGTTATGTAAAGATGGTGTGCCTGAGGGAGCCCCCGCAGCTGGTG
CTGGGCCTGCACTTCCTTGGCCCCAACGCAGGCGAAGTTACTCAAGGATTTGCTCTGGGG
ATCAAGTGTGGGGCCTCCTACGCGCAGGTGATGCGGACCGTGGGTATCCATCCCACATGC
TCCGAGGAGGTAGTCAAGCTGCGCATCTCCAAGCGCTCAGGCCTGGACCCCACGGTGACA
GGCTGC
//
KQ009283.1:subseq(2315798,100074)	GeneWise	match	12652	84060	998.00	+	.	KQ009283.1:subseq(2315798,100074)-genewise-prediction-1
KQ009283.1:subseq(2315798,100074)	GeneWise	cds	12652	12754	0.00	+	0	KQ009283.1:subseq(2315798,100074)-genewise-prediction-1
KQ009283.1:subseq(2315798,100074)	GeneWise	intron	12755	22986	0.00	+	.	KQ009283.1:subseq(2315798,100074)-genewise-prediction-1
KQ009283.1:subseq(2315798,100074)	GeneWise	cds	22987	23055	0.00	+	2	KQ009283.1:subseq(2315798,100074)-genewise-prediction-1
KQ009283.1:subseq(2315798,100074)	GeneWise	intron	23056	38846	0.00	+	.	KQ009283.1:subseq(2315798,100074)-genewise-prediction-1
KQ009283.1:subseq(2315798,100074)	GeneWise	cds	38847	38903	0.00	+	2	KQ009283.1:subseq(2315798,100074)-genewise-prediction-1
KQ009283.1:subseq(2315798,100074)	GeneWise	intron	38904	40060	0.00	+	.	KQ009283.1:subseq(2315798,100074)-genewise-prediction-1
KQ009283.1:subseq(2315798,100074)	GeneWise	cds	40061	40205	0.00	+	2	KQ009283.1:subseq(2315798,100074)-genewise-prediction-1
KQ009283.1:subseq(2315798,100074)	GeneWise	intron	40206	40848	0.00	+	.	KQ009283.1:subseq(2315798,100074)-genewise-prediction-1
KQ009283.1:subseq(2315798,100074)	GeneWise	cds	40849	40923	0.00	+	1	KQ009283.1:subseq(2315798,100074)-genewise-prediction-1
KQ009283.1:subseq(2315798,100074)	GeneWise	intron	40924	44988	0.00	+	.	KQ009283.1:subseq(2315798,100074)-genewise-prediction-1
KQ009283.1:subseq(2315798,100074)	GeneWise	cds	44989	45067	0.00	+	1	KQ009283.1:subseq(2315798,100074)-genewise-prediction-1
KQ009283.1:subseq(2315798,100074)	GeneWise	intron	45068	45549	0.00	+	.	KQ009283.1:subseq(2315798,100074)-genewise-prediction-1
KQ009283.1:subseq(2315798,100074)	GeneWise	cds	45550	45612	0.00	+	0	KQ009283.1:subseq(2315798,100074)-genewise-prediction-1
KQ009283.1:subseq(2315798,100074)	GeneWise	intron	45613	50002	0.00	+	.	KQ009283.1:subseq(2315798,100074)-genewise-prediction-1
KQ009283.1:subseq(2315798,100074)	GeneWise	cds	50003	50073	0.00	+	0	KQ009283.1:subseq(2315798,100074)-genewise-prediction-1
KQ009283.1:subseq(2315798,100074)	GeneWise	intron	50074	60998	0.00	+	.	KQ009283.1:subseq(2315798,100074)-genewise-prediction-1
KQ009283.1:subseq(2315798,100074)	GeneWise	cds	60999	61018	0.00	+	1	KQ009283.1:subseq(2315798,100074)-genewise-prediction-1
KQ009283.1:subseq(2315798,100074)	GeneWise	intron	61019	61900	0.00	+	.	KQ009283.1:subseq(2315798,100074)-genewise-prediction-1
KQ009283.1:subseq(2315798,100074)	GeneWise	cds	61901	61992	0.00	+	2	KQ009283.1:subseq(2315798,100074)-genewise-prediction-1
KQ009283.1:subseq(2315798,100074)	GeneWise	intron	61993	64740	0.00	+	.	KQ009283.1:subseq(2315798,100074)-genewise-prediction-1
KQ009283.1:subseq(2315798,100074)	GeneWise	cds	64741	64915	0.00	+	0	KQ009283.1:subseq(2315798,100074)-genewise-prediction-1
KQ009283.1:subseq(2315798,100074)	GeneWise	intron	64916	77739	0.00	+	.	KQ009283.1:subseq(2315798,100074)-genewise-prediction-1
KQ009283.1:subseq(2315798,100074)	GeneWise	cds	77740	77876	0.00	+	2	KQ009283.1:subseq(2315798,100074)-genewise-prediction-1
KQ009283.1:subseq(2315798,100074)	GeneWise	intron	77877	80467	0.00	+	.	KQ009283.1:subseq(2315798,100074)-genewise-prediction-1
KQ009283.1:subseq(2315798,100074)	GeneWise	cds	80468	80563	0.00	+	0	KQ009283.1:subseq(2315798,100074)-genewise-prediction-1
KQ009283.1:subseq(2315798,100074)	GeneWise	intron	80564	80914	0.00	+	.	KQ009283.1:subseq(2315798,100074)-genewise-prediction-1
KQ009283.1:subseq(2315798,100074)	GeneWise	cds	80915	81007	0.00	+	0	KQ009283.1:subseq(2315798,100074)-genewise-prediction-1
KQ009283.1:subseq(2315798,100074)	GeneWise	intron	81008	82729	0.00	+	.	KQ009283.1:subseq(2315798,100074)-genewise-prediction-1
KQ009283.1:subseq(2315798,100074)	GeneWise	cds	82730	82801	0.00	+	0	KQ009283.1:subseq(2315798,100074)-genewise-prediction-1
KQ009283.1:subseq(2315798,100074)	GeneWise	intron	82802	82979	0.00	+	.	KQ009283.1:subseq(2315798,100074)-genewise-prediction-1
KQ009283.1:subseq(2315798,100074)	GeneWise	cds	82980	83077	0.00	+	0	KQ009283.1:subseq(2315798,100074)-genewise-prediction-1
KQ009283.1:subseq(2315798,100074)	GeneWise	intron	83078	83939	0.00	+	.	KQ009283.1:subseq(2315798,100074)-genewise-prediction-1
KQ009283.1:subseq(2315798,100074)	GeneWise	cds	83940	84060	0.00	+	1	KQ009283.1:subseq(2315798,100074)-genewise-prediction-1
//

genewise output
Score 32.52 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000138_2.0  157 IKASFVDEHTVCGVAKGGKE                              
                     IKA+++ EHTVCGVAK G++                              
                     IKAALLTEHTVCGVAKSGRK                              
KQ009283.1:sub-42251 aaggtcagcagtgggaagaa                              
                     taccttcaactggtcaggga                              
                     caatgtagcgttctcgtaag                              


//
>KQ009283.1:subseq(2315798,100074).pep
IKAALLTEHTVCGVAKSGRK
//
>KQ009283.1:subseq(2315798,100074).[42251:42190].sp
ATCAAAGCAGCTTTGCTTACAGAGCACACGGTTTGTGGCGTTGCCAAGAGTGGAAGAAAG
//
KQ009283.1:subseq(2315798,100074)	GeneWise	match	42251	42192	32.52	-	.	KQ009283.1:subseq(2315798,100074)-genewise-prediction-1
KQ009283.1:subseq(2315798,100074)	GeneWise	cds	42251	42192	0.00	-	0	KQ009283.1:subseq(2315798,100074)-genewise-prediction-1
//
