
genewise output
Score 230.26 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000128_2.0    1 MSGEPGQTSVAPPPEEVEPGSGVRIVVEY                     
                     MSGEPGQTSVAPPPEEVE GSGVRI+VEY                     
                     MSGEPGQTSVAPPPEEVELGSGVRIMVEY                     
KQ008639.1:subs49284 aaggcgcatggcccggggcgaggcaaggt                     
                     tggacgacctccccaatatgggtgtttaa                     
                     gcggggggcagctcggggggtgcccgggc                     


SPP00000128_2.0   30                           EPCGFEATYLELASAVKEQYPGI 
                                               EPCGFEATYLELASAVKEQYPGI 
                                C:C[tgt]       EPCGFEATYLELASAVKEQYPGI 
KQ008639.1:subs49371 TGGTGAGCG  Intron 1   CAGTgctgtggatcgcgaggagctcga 
                       <2-----[49373:49485]-2> acggtaccatatcgctaaaacgt 
                                               accccggccgggcttggggtgcc 


SPP00000128_2.0   54 EIESRLGGT                          AFEIEINGQLVFSK 
                     EIESRLGGT                          AFEIEINGQLVFSK 
                     EIESRLGGT          G:G[ggt]        AFEIEINGQLVFSK 
KQ008639.1:subs49556 gagtctggaGGTGAGGC  Intron 2   CAGGTgtgagaagccgtta 
                     atacgtggc <1-----[49584:50000]-1>  ctatatagatttca 
                     gcggcggca                          ctgagatagggccg 


SPP00000128_2.0   78 LENGGFPYEKDVSIYSVGRTSWSPYPNSASSCHSTPLA            
                     LENGGFPYEKDVSI SVGRTS S YP+SASSCHST L+            
                     LENGGFPYEKDVSICSVGRTSGSSYPSSASSCHSTSLS            
KQ008639.1:subs50045 cgaggtctgaggaataggaatgtttcaagtttctatct            
                     taaggtcaaaatgtggtggccgccacggcccgaccctc            
                     ggtgctctgatgttcttggctgacccctaacttcatgc            


//
Making a C in phase 2 intron
Making a G in phase 1 intron
>KQ008639.1:subseq(3728043,100104).pep
MSGEPGQTSVAPPPEEVELGSGVRIMVEYCEPCGFEATYLELASAVKEQYPGIEIESRLG
GTGAFEIEINGQLVFSKLENGGFPYEKDVSICSVGRTSGSSYPSSASSCHSTSLS
//
>KQ008639.1:subseq(3728043,100104).[49284:50158].sp
ATGAGCGGGGAGCCGGGGCAGACGTCCGTAGCGCCCCCTCCCGAGGAGGTGGAGCTGGGG
AGTGGGGTCCGCATCATGGTGGAGTACTGTGAACCCTGCGGCTTCGAGGCGACCTACCTG
GAGCTGGCCAGTGCTGTGAAGGAGCAGTATCCGGGCATCGAGATCGAGTCGCGCTTGGGG
GGCACAGGTGCCTTTGAGATAGAGATAAATGGACAGCTGGTGTTCTCCAAGCTGGAGAAT
GGGGGCTTTCCCTATGAGAAAGATGTGAGTATTTGCAGTGTTGGGAGGACCTCTGGGTCA
TCCTACCCCAGCAGTGCATCATCCTGTCATTCCACATCTCTGTCC
//
KQ008639.1:subseq(3728043,100104)	GeneWise	match	49284	50158	230.26	+	.	KQ008639.1:subseq(3728043,100104)-genewise-prediction-1
KQ008639.1:subseq(3728043,100104)	GeneWise	cds	49284	49372	0.00	+	0	KQ008639.1:subseq(3728043,100104)-genewise-prediction-1
KQ008639.1:subseq(3728043,100104)	GeneWise	intron	49373	49485	0.00	+	.	KQ008639.1:subseq(3728043,100104)-genewise-prediction-1
KQ008639.1:subseq(3728043,100104)	GeneWise	cds	49486	49583	0.00	+	1	KQ008639.1:subseq(3728043,100104)-genewise-prediction-1
KQ008639.1:subseq(3728043,100104)	GeneWise	intron	49584	50000	0.00	+	.	KQ008639.1:subseq(3728043,100104)-genewise-prediction-1
KQ008639.1:subseq(3728043,100104)	GeneWise	cds	50001	50158	0.00	+	2	KQ008639.1:subseq(3728043,100104)-genewise-prediction-1
//

genewise output
Score 17.55 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000128_2.0    6 GQTSVAPPPEEVEPGSGVRI                              
                     G   +  PP+ VE G G+ +                              
                     GMGKIMGPPQHVEAGKGLPV                              
KQ008639.1:sub-54282 gagaaagccccggggagccg                              
                     gtgattgccaatacgagtct                              
                     gggatggatgtggaggggtg                              


//
>KQ008639.1:subseq(3728043,100104).pep
GMGKIMGPPQHVEAGKGLPV
//
>KQ008639.1:subseq(3728043,100104).[54282:54221].sp
GGGATGGGGAAAATTATGGGGCCACCTCAGCATGTGGAGGCAGGGAAGGGGCTGCCTGTG
//
KQ008639.1:subseq(3728043,100104)	GeneWise	match	54282	54223	17.55	-	.	KQ008639.1:subseq(3728043,100104)-genewise-prediction-1
KQ008639.1:subseq(3728043,100104)	GeneWise	cds	54282	54223	0.00	-	0	KQ008639.1:subseq(3728043,100104)-genewise-prediction-1
//
