
genewise output
Score 16.80 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000112_2.0   14 MWSIGAGAL                                         
                     +WS+GAG +                                         
                     LWSLGAGVV                                         
KQ006837.1:subs15742 ctacggggg                                         
                     tggtgcgtt                                         
                     tgcggggac                                         


//
>KQ006837.1:subseq(1922716,100104).pep
LWSLGAGVV
//
>KQ006837.1:subseq(1922716,100104).[15742:15768].sp
CTTTGGAGCCTGGGGGCGGGGGTAGTC
//
KQ006837.1:subseq(1922716,100104)	GeneWise	match	15742	15768	16.80	+	.	KQ006837.1:subseq(1922716,100104)-genewise-prediction-1
KQ006837.1:subseq(1922716,100104)	GeneWise	cds	15742	15768	0.00	+	0	KQ006837.1:subseq(1922716,100104)-genewise-prediction-1
//

genewise output
Score 485.89 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000112_2.0    1 MSFLQDPSFFTMGMWSIGAGALGAAALALLLANTDVFLSKPQKAALEYL 
                     MSFLQDPSFFTMGMWSIGAGALGAAALALLLANTDVFLSKPQKAALEYL 
                     MSFLQDPSFFTMGMWSIGAGALGAAALALLLANTDVFLSKPQKAALEYL 
KQ006837.1:sub-52043 attccgcattaagattaggggcggggtgtccgaaggtctaccaggcgtc 
                     tcttaacgttctgtgctgcgctgccctctttcacatttcacaacctaat 
                     gtccgcatcccggggcttaacggttcgagttccacgtgcgcgaaaggcg 


SPP00000112_2.0   50 EDIDLKTLEK                          PRTFKAKELWEKN 
                     EDIDLKTLEK                          PRT+KAKELWEKN 
                     EDIDLKTLEK          E:E[gaa]        PRTLKAKELWEKN 
KQ006837.1:sub-51896 ggagcaacgaGGTAAGTG  Intron 1   TAGAAcaatagagctgaa 
                     aatatactaa <1-----[51865:50104]-1>  cgctacaatgaaa 
                     gtacgaaggg                          agtgaaggagaat 


SPP00000112_2.0   74 GAVIMAVRRPGCFLCRE                       EAADLSSLK 
                     GAVIMAVRRPGCFLCRE                       EAADLSSLK 
                     GAVIMAVRRPGCFLCRE                       EAADLSSLK 
KQ006837.1:sub-50062 gggaaggcacgttctcgGTGAGTG  Intron 2   CAGggggcttca 
                     gctttctggcggttgga<0-----[50011:46648]-0>accatccta 
                     atgtgcgggactcctag                       atgtgtcga 


SPP00000112_2.0  100 SMLDQLGVPLYAVVKEHIRTEVKDFQPYFKGEIFLDEK            
                     SMLDQLGVPLYAVVKEHIRTEV+DFQPYFKGEIFLDEK            
                     SMLDQLGVPLYAVVKEHIRTEVEDFQPYFKGEIFLDEK            
KQ006837.1:sub-46620 aatgccggcctgggagcaaaggggtccttaggatcgga            
                     gttaatgtctacttaaatgcataatacatagatttaaa            
                     cggcggcccctagaggccgcaggtcgttcaaaccgtag            


SPP00000112_2.0  138                        KKFYGPQRRKMMFMGFIRLGVWYNFF 
                                            KKFYGPQRRKMMFMGFIRLGVWYNFF 
                                            KKFYGPQRRKMMFMGFIRLGVWYNFF 
KQ006837.1:sub-46506 GTGTGTG  Intron 3   CAGaattgccacaaatagtaccggttatt 
                     <0-----[46506:45187]-0>aatagcaggattttgttgtgtgaatt 
                                            agtttaagggggtgatctgaggcccc 


SPP00000112_2.0  164 RAWNGGFSGNLEGEGFILGGVFVVGSGKQ                     
                     RAWNGGFSGNLEGEGFILGGVFVVGSGKQ                     
                     RAWNGGFSGNLEGEGFILGGVFVVGSGKQ                     
KQ006837.1:sub-45108 cgtaggttgacggggtacgggtgggtgacGTGAGTT  Intron 4    
                     gcgaggtcgatagagtttggttttgcgaa<0-----[45021:41488] 
                     acgtacctacgaaaccctgatcgaaaagg                     


SPP00000112_2.0  193    GILLEHREKEFGDKVNLLSVLEAAKMIKPQTLASEKK          
                        GILLEHREKEFGDKVNLLSVLEAAKMIKPQTLASEKK          
                        GILLEHREKEFGDKVNLLSVLEAAKMIKPQTLASEKK          
KQ006837.1:sub-41490 TAGgaccgccgagtggagatctgcgggaaaaccatgtgaa          
                     -0>gtttaagaaatgaatattcttaccattacactccaaa          
                        ctttgcagagtacaacatttgattggcaagtgcagaa          


//
Making a E in phase 1 intron
>KQ006837.1:subseq(1922716,100104).pep
MSFLQDPSFFTMGMWSIGAGALGAAALALLLANTDVFLSKPQKAALEYLEDIDLKTLEKE
PRTLKAKELWEKNGAVIMAVRRPGCFLCREEAADLSSLKSMLDQLGVPLYAVVKEHIRTE
VEDFQPYFKGEIFLDEKKKFYGPQRRKMMFMGFIRLGVWYNFFRAWNGGFSGNLEGEGFI
LGGVFVVGSGKQGILLEHREKEFGDKVNLLSVLEAAKMIKPQTLASEKK
//
>KQ006837.1:subseq(1922716,100104).[52043:41375].sp
ATGTCTTTCCTCCAGGACCCAAGTTTCTTCACCATGGGGATGTGGTCCATTGGTGCAGGA
GCCCTGGGGGCTGCTGCCTTGGCATTGCTTCTTGCCAACACAGACGTGTTTCTGTCCAAG
CCCCAGAAAGCAGCACTGGAGTACCTGGAGGATATAGACCTGAAAACACTGGAGAAGGAA
CCAAGGACTTTGAAAGCAAAGGAGCTATGGGAAAAAAATGGAGCTGTGATTATGGCCGTG
CGGAGGCCAGGCTGTTTCCTCTGTCGAGAGGAAGCTGCGGATCTGTCTTCCCTGAAAAGC
ATGTTGGACCAGCTGGGCGTCCCCCTCTATGCAGTGGTAAAGGAGCACATCAGGACCGAA
GTGGAGGATTTCCAGCCTTATTTCAAAGGAGAAATCTTCCTGGATGAAAAGAAAAAGTTT
TATGGTCCACAAAGGCGGAAGATGATGTTTATGGGATTTATCCGTCTGGGAGTGTGGTAC
AACTTCTTCCGAGCCTGGAATGGAGGCTTCTCTGGAAACCTGGAAGGAGAAGGCTTCATC
CTTGGGGGAGTTTTCGTGGTAGGATCAGGAAAGCAGGGCATTCTTCTTGAGCACCGAGAG
AAAGAGTTTGGAGACAAAGTAAACTTACTTTCTGTTCTGGAAGCTGCTAAGATGATCAAA
CCACAGACTTTGGCCTCAGAGAAAAAA
//
KQ006837.1:subseq(1922716,100104)	GeneWise	match	52043	41377	485.89	-	.	KQ006837.1:subseq(1922716,100104)-genewise-prediction-1
KQ006837.1:subseq(1922716,100104)	GeneWise	cds	52043	51866	0.00	-	0	KQ006837.1:subseq(1922716,100104)-genewise-prediction-1
KQ006837.1:subseq(1922716,100104)	GeneWise	intron	51865	50104	0.00	-	.	KQ006837.1:subseq(1922716,100104)-genewise-prediction-1
KQ006837.1:subseq(1922716,100104)	GeneWise	cds	50103	50012	0.00	-	2	KQ006837.1:subseq(1922716,100104)-genewise-prediction-1
KQ006837.1:subseq(1922716,100104)	GeneWise	intron	50011	46648	0.00	-	.	KQ006837.1:subseq(1922716,100104)-genewise-prediction-1
KQ006837.1:subseq(1922716,100104)	GeneWise	cds	46647	46507	0.00	-	0	KQ006837.1:subseq(1922716,100104)-genewise-prediction-1
KQ006837.1:subseq(1922716,100104)	GeneWise	intron	46506	45187	0.00	-	.	KQ006837.1:subseq(1922716,100104)-genewise-prediction-1
KQ006837.1:subseq(1922716,100104)	GeneWise	cds	45186	45022	0.00	-	0	KQ006837.1:subseq(1922716,100104)-genewise-prediction-1
KQ006837.1:subseq(1922716,100104)	GeneWise	intron	45021	41488	0.00	-	.	KQ006837.1:subseq(1922716,100104)-genewise-prediction-1
KQ006837.1:subseq(1922716,100104)	GeneWise	cds	41487	41377	0.00	-	0	KQ006837.1:subseq(1922716,100104)-genewise-prediction-1
//
