
genewise output
Score 341.84 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000100_2.0    1 MERQEESLSARPALETEGLRFLHTT                         
                     MER+E+SLSARPALETEGLRFLH T                         
                     MEREEDSLSARPALETEGLRFLHVT          V:V[gtg]       
KQ006219.1:subs50000 agcgggtttgccgcgaggcctccgaGGTGAGTC  Intron 1       
                     tagaaactccgcctacagtgttatc <1-----[50076:50726]    
                     gggagtcgcgggcggcgagccgccg                         


SPP00000100_2.0   26      GSLLATYGWYIVFSCILLYVVFQKLSARLRALRQRQLDRAAAAV 
                          GSLLA+YGWYIVFSCILLYVVFQKLSARLRALRQRQL+RAAA+V 
                          GSLLASYGWYIVFSCILLYVVFQKLSARLRALRQRQLERAAASV 
KQ006219.1:subs50724 CAGTGgttcgatgttagtatacctggtcactgccagtacaccgcgggtg 
                     -1>  gcttcgaggatttggtttatttaatccgtgctgagatagcccct 
                          ctggcctcgccccccctccgctggtccggacgggggggatgttg 


SPP00000100_2.0   71                           PDVVVKRQEALAAARLKMQEELN 
                                               PDVVVKRQEALAAARLKMQEELN 
                               E:E[gaa]        PDVVVKRQEALAAARLKMQEELN 
KQ006219.1:subs50861 GGTTAGTG  Intron 2   TAGAAcggggaccggtgggctaacggca 
                      <1-----[50862:52043]-1>  catttagaactcccgtataaata 
                                               tttttaaaataattagagaaaat 


SPP00000100_2.0   95 AQVEKHKEKLKQ                       LEEEKRRQKIEMWD 
                     AQVEKHKEKLKQ                       LEEEKRRQKIEMWD 
                     AQVEKHKEKLKQ                       LEEEKRRQKIEMWD 
KQ006219.1:subs52115 gcggacagacacGTATGAA  Intron 3   CAGcgggaaacaagatg 
                     cataaaaaataa<0-----[52151:52722]-0>taaaaggaatatga 
                     gatagtgaagag                       taaaagaagtaggc 


SPP00000100_2.0  121 SMQEGKSYKGNAKKPQ                       EEDSPGPSTS 
                     SMQEGKSYKGNAKKPQ                       EEDSPGPSTS 
                     SMQEGKSYKGNAKKPQ                       EEDSPGPSTS 
KQ006219.1:subs52765 aacggaatagagaaccGTGACTG  Intron 4   CAGgggacgctat 
                     gtaagagaagacaaca<0-----[52813:52906]-0>aaagcgcccc 
                     cgaaaatcaataggtg                       gacttgtcta 


SPP00000100_2.0  147 SVL-KRKSDRKPLRGG                          YNPLSGE 
                     SV+ KRKSDRKPLRGG                          YNPLSGE 
                     SVVVKRKSDRKPLRGG          G:G[ggt]        YNPLSGE 
KQ006219.1:subs52937 tgggacatgaactcggGGTAAGCA  Intron 5   TAGGTtacttgg 
                     ctttagacagactggg <1-----[52986:54535]-1>  aactcga 
                     ttcgagagcagaggat                          tctgtta 


SPP00000100_2.0  170 GGGACSWRPGRRGPSSGG                                
                     GGG+CSWRPGRRGPSSGG                                
                     GGGSCSWRPGRRGPSSGG                                
KQ006219.1:subs54559 gggatttacgcagcttgg                                
                     gggggcggcggggcccgg                                
                     atacccgatacacaatca                                


//
Making a V in phase 1 intron
Making a E in phase 1 intron
Making a G in phase 1 intron
>KQ006219.1:subseq(1850588,100101).pep
MEREEDSLSARPALETEGLRFLHVTVGSLLASYGWYIVFSCILLYVVFQKLSARLRALRQ
RQLERAAASVEPDVVVKRQEALAAARLKMQEELNAQVEKHKEKLKQLEEEKRRQKIEMWD
SMQEGKSYKGNAKKPQEEDSPGPSTSSVVVKRKSDRKPLRGGGYNPLSGEGGGSCSWRPG
RRGPSSGG
//
>KQ006219.1:subseq(1850588,100101).[50000:54612].sp
ATGGAGCGGGAAGAGGATTCCTTGTCCGCGCGGCCGGCCCTGGAGACCGAGGGACTGCGC
TTCCTGCACGTCACGGTGGGCTCTTTGCTGGCCAGCTATGGCTGGTACATCGTCTTCAGC
TGCATCCTTCTCTACGTGGTCTTTCAGAAGCTTTCCGCCCGGCTGAGAGCCTTGAGGCAG
AGGCAGCTGGAGCGAGCTGCGGCTTCTGTGGAACCTGATGTTGTTGTTAAACGACAAGAA
GCTTTAGCAGCTGCTCGATTGAAAATGCAAGAAGAACTAAATGCGCAAGTTGAAAAGCAT
AAGGAAAAACTGAAACAGCTTGAAGAAGAAAAAAGGAGACAAAAGATTGAAATGTGGGAC
AGCATGCAAGAAGGAAAAAGTTACAAAGGAAATGCAAAGAAGCCTCAGGAGGAAGACAGT
CCTGGGCCTTCCACTTCATCTGTTGTCGTGAAACGGAAATCGGACAGAAAGCCATTGCGG
GGAGGTGGTTATAACCCTTTGTCTGGTGAAGGAGGTGGAAGCTGCTCCTGGAGACCTGGA
CGCAGAGGCCCATCATCTGGCGGA
//
KQ006219.1:subseq(1850588,100101)	GeneWise	match	50000	54612	341.84	+	.	KQ006219.1:subseq(1850588,100101)-genewise-prediction-1
KQ006219.1:subseq(1850588,100101)	GeneWise	cds	50000	50075	0.00	+	0	KQ006219.1:subseq(1850588,100101)-genewise-prediction-1
KQ006219.1:subseq(1850588,100101)	GeneWise	intron	50076	50726	0.00	+	.	KQ006219.1:subseq(1850588,100101)-genewise-prediction-1
KQ006219.1:subseq(1850588,100101)	GeneWise	cds	50727	50861	0.00	+	2	KQ006219.1:subseq(1850588,100101)-genewise-prediction-1
KQ006219.1:subseq(1850588,100101)	GeneWise	intron	50862	52043	0.00	+	.	KQ006219.1:subseq(1850588,100101)-genewise-prediction-1
KQ006219.1:subseq(1850588,100101)	GeneWise	cds	52044	52150	0.00	+	2	KQ006219.1:subseq(1850588,100101)-genewise-prediction-1
KQ006219.1:subseq(1850588,100101)	GeneWise	intron	52151	52722	0.00	+	.	KQ006219.1:subseq(1850588,100101)-genewise-prediction-1
KQ006219.1:subseq(1850588,100101)	GeneWise	cds	52723	52812	0.00	+	0	KQ006219.1:subseq(1850588,100101)-genewise-prediction-1
KQ006219.1:subseq(1850588,100101)	GeneWise	intron	52813	52906	0.00	+	.	KQ006219.1:subseq(1850588,100101)-genewise-prediction-1
KQ006219.1:subseq(1850588,100101)	GeneWise	cds	52907	52985	0.00	+	0	KQ006219.1:subseq(1850588,100101)-genewise-prediction-1
KQ006219.1:subseq(1850588,100101)	GeneWise	intron	52986	54535	0.00	+	.	KQ006219.1:subseq(1850588,100101)-genewise-prediction-1
KQ006219.1:subseq(1850588,100101)	GeneWise	cds	54536	54612	0.00	+	2	KQ006219.1:subseq(1850588,100101)-genewise-prediction-1
//

genewise output
Score 20.30 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000100_2.0   35 WYIVFSCILLYVVF                                    
                     +YIVF CI+  +V+                                    
                     YYIVFICIIFIIVL                                    
KQ006219.1:sub-83758 ttagtataataagt                                    
                     aattttgttttttt                                    
                     cctattttttttga                                    


//
>KQ006219.1:subseq(1850588,100101).pep
YYIVFICIIFIIVL
//
>KQ006219.1:subseq(1850588,100101).[83758:83715].sp
TACTACATTGTATTTATTTGTATTATTTTTATTATTGTGTTA
//
KQ006219.1:subseq(1850588,100101)	GeneWise	match	83758	83717	20.30	-	.	KQ006219.1:subseq(1850588,100101)-genewise-prediction-1
KQ006219.1:subseq(1850588,100101)	GeneWise	cds	83758	83717	0.00	-	0	KQ006219.1:subseq(1850588,100101)-genewise-prediction-1
//
